ViewGene
Locus Name:
GeneID:
Location:

GeneID:3628
TrivialName: PA14_49100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49100
PAO1 Ortholog Locus:PA1185
Sequence Length:630
Protein Length:209
Start: 4362023
Stop: 4361394
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04574.1|AE004549_1 (AE004549) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 208/209 (99%), Positives = 209/209 (100%)
Sequence:
ATGCCTTCCCTCCAGCTCTACAGCGACAGTTCACCCAACGGATTCAAGATCACCATCGCCCTCGAGGAACTG
GGGCTGCCCTACGCACTGCACCACGTTCGCATCGACCATGGCGAGCAACGCCGCCCGGAATTCCTGCGCCTG
AATCCACATGGCCGGATACCGGTGCTGGTAGACCGGGCCGCCGGCATCACCCTGTTCGAGTCGGCGGCGATC
CTGCAGTACCTGGCGGAGACCAGCGGGCGGTTGCTTCCCGACGCCCCCCGGGAACGCTGGGAGGCCCTGACC
TGGCTGACTTTCCATGCTTCCAGCATGGGGCCCATCCTCGGCCAGCGCGTGCATTTCGAGATCTTCGCCGAA
GAGCGGTACCCGCCGGCCATCGAACGCTATCGGCGGCTCTCCGAGGAGGTTTTCGCCACCCTCGACCAGCGC
CTGGCCGGACGGCCCTGGCTGGCCGGTGAGCAATACTCCATCGCCGATATCGCCACCTTCGGCTGGACCCAT
ACGGCGCGGATCGTCGACTTCGACTTCAGCCATTATCGCCACCTGGACGACTGGCACCGGCGCATGGCCCTG
CGGCCTGCGGTGCAGCGCGGGATCGTCCTGCCGGAACCGGCGGTGGGTCCATGA
Translation:
MPSLQLYSDSSPNGFKITIALEELGLPYALHHVRIDHGEQRRPEFLRLNPHGRIPVLVDRAAGITLFESAAI
LQYLAETSGRLLPDAPRERWEALTWLTFHASSMGPILGQRVHFEIFAEERYPPAIERYRRLSEEVFATLDQR
LAGRPWLAGEQYSIADIATFGWTHTARIVDFDFSHYRHLDDWHRRMALRPAVQRGIVLPEPAVGP*
AnnotationID:3636GeneID:3628
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 15:03:49
Gene Name:
Confidence Code:3
GeneProduct:probable glutathione S-transferase
Cell Localization:(1) Cytoplasmic
Synonyms:yfcG
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
PF00043 Glutathione S-transferases






   
Genomic Context:






   
Comment:


















    ReferenceID:7259




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16977




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1185_CDS.cgi


    		




 
URL:

















    ReferenceID:24401




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3628
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5814
                           PA1185_tr
                           translation of PA1185
                           209
                           99.52
                           99.99
                           0
                           1105.0
     

     
     
162195
                           gb|AAG04574.1|AE004549_1
                           (AE004549) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           209
                           99.52
                           99.99
                           0
                           1105.0
     

     
     
162196
                           emb|CAE16631.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           209
                           67.94
                           82.77
                           2
                           772.0
     

     
     
162203
                           dbj|BAC92287.1|
                           (AP006583) gll4346 [Gloeobacter violaceus PCC 7421]
                           220
                           44.09
                           60.45
                           18
                           433.0
     

     
     
162201
                           gb|AAG04422.1|AE004536_1
                           (AE004536) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           215
                           42.32
                           59.53
                           8
                           442.0
     

     






      

          
GC ORFID: 46630How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1185Glimmer Score: 

          
Start: 591885Stop: 592514

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1185 translation of PA1185Homolog Bit Score 430.0

          
Other Homologs:  t_PA1033 (ORF: BLASTX 174.0), t_PA1623 (ORF: BLASTX 160.0), t_PA1185 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTCCCTCCAGCTCTACAGCGACAGTTCACCCAACGGATTCAAGATCACCATCGCCCTCGAGGAACTG 
GGGCTGCCCTACGCACTGCACCACGTTCGCATCGACCATGGCGAGCAACGCCGCCCGGAATTCCTGCGCCTG 
AATCCACATGGCCGGATACCGGTGCTGGTAGACCGGGCCGCCGGCATCACCCTGTTCGAGTCGGCGGCGATC 
CTGCAGTACCTGGCGGAGACCAGCGGGCGGTTGCTTCCCGACGCCCCCCGGGAACGCTGGGAGGCCCTGACC 
TGGCTGACTTTCCATGCTTCCAGCATGGGGCCCATCCTCGGCCAGCGCGTGCATTTCGAGATCTTCGCCGAA 
GAGCGGTACCCGCCGGCCATCGAACGCTATCGGCGGCTCTCCGAGGAGGTTTTCGCCACCCTCGACCAGCGC 
CTGGCCGGACGGCCCTGGCTGGCCGGTGAGCAATACTCCATCGCCGATATCGCCACCTTCGGCTGGACCCAT 
ACGGCGCGGATCGTCGACTTCGACTTCAGCCATTATCGCCACCTGGACGACTGGCACCGGCGCATGGCCCTG 
CGGCCTGCGGTGCAGCGCGGGATCGTCCTGCCGGAACCGGCGGTGGGTCCATGA