ViewGene
Locus Name:
GeneID:
Location:

GeneID:3627
TrivialName: PA14_07310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07310
PAO1 Ortholog Locus:PA0562
Sequence Length:675
Protein Length:224
Start: 629981
Stop: 629307
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03951.1|AE004492_10 (AE004492) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 224/224 (100%), Positives = 224/224 (100%)
Sequence:
ATGCCCCATCCCATCGACGCACTGATTTCCGACTGCGACGGCGTCCTGGTCGACAGCGAGGTCATCGCCGAG
CGCGTGATGTACGAGGCGCTCAGCGCCTACGCGCCGCTGGAGGAGCTGCAGCGCCTGCTGGAAGGCACCTTC
GGCCTGACCAGCCGCGACATCCTCGATCGCGTCGAGAAGCACTTCGGCCTGCGCATCCCCGACAGCTTCAAC
CGCGAGGTGCGCCAGCGCAGCGAGGAGATGGTCGCCCAGGTCCAACCCATTCCCGGCGCACGCGAGGCGCTG
CTGGCCCTGGATCTGCCCGTCGCGGTGGCCTCCAACAGCCGCCGCCACAGCCTGGAGCGCTCGCTGGCGCGC
GCCGGGCTCAGCGAACTGATCGGCGAACGCCTGGCCAGCGCCGATATGGTCGCCCTGCCCAAGCCCGCACCC
GACGTCTACCTGCACGCCGCCAGCCTGCTCGGCGTCGCCCCCGAGCGTTGCCTGGTGGTGGAAGACAGCAGC
ACCGGCACCCGCGCCGCCCTCGCCGCGGGGATGCGGGTGATCGGCTTCGTCGGCGCCGGGCACATTCCCGCC
GGGCACGCCGAGGTACTGCGCGAGCTGGGCGCCATCGCCATCGTCGAGCACATGCGCGAACTGCCGGAGACC
GTGGCGCGCCTGCGCCGGACAGTCTGA
Translation:
MPHPIDALISDCDGVLVDSEVIAERVMYEALSAYAPLEELQRLLEGTFGLTSRDILDRVEKHFGLRIPDSFN
REVRQRSEEMVAQVQPIPGAREALLALDLPVAVASNSRRHSLERSLARAGLSELIGERLASADMVALPKPAP
DVYLHAASLLGVAPERCLVVEDSSTGTRAALAAGMRVIGFVGAGHIPAGHAEVLRELGAIAIVEHMRELPET
VARLRRTV*
AnnotationID:3635GeneID:3627
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:14
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA0562
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0637,pfam00702
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM41992.1| (AE012385) hydrolase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 225

 Score =  247 bits (631), Expect = 3e-65
 Identities = 125/219 (57%), Positives = 164/219 (74%), Gaps = 1/219 (0%)

>gb|AAM37728.1| (AE011930) hydrolase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 225

 Score =  244 bits (624), Expect = 2e-64
 Identities = 124/216 (57%), Positives = 161/216 (74%), Gaps = 1/216 (0%)








 
Structural Features:
COG0637, Predicted phosphatase/phosphohexomutase
CD-Length = 221 residues,  99.5% aligned
Score =  148 bits (375), Expect = 4e-37
Identities = 82/223 (36%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.
CD-Length = 197 residues,  99.5% aligned
Score = 74.6 bits (182), Expect = 9e-15
Identities = 57/197 (28%), Positives = 83/197 (42%), Gaps = 17/197 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7257




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24399




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33866




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3627_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3627
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5813
                           PA0562_tr
                           translation of PA0562
                           224
                           99.99
                           99.99
                           0
                           1107.0
     

     
     
162186
                           gb|AAG03951.1|AE004492_10
                           (AE004492) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           224
                           99.99
                           99.99
                           0
                           1107.0
     

     
     
162187
                           gb|AAM41992.1|
                           (AE012385) hydrolase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           227
                           55.06
                           72.24
                           5
                           626.0
     

     
     
162188
                           gb|AAM37728.1|
                           (AE011930) hydrolase [Xanthomonas axonopodis pv. citri str. 306]
                           227
                           54.62
                           71.36
                           5
                           618.0
     

     
     
162190
                           emb|CAD15848.1|
                           (AL646068) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           244
                           44.26
                           51.63
                           32
                           390.0
     

     






      

          
GC ORFID: 46629How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0562Glimmer Score: 

          
Start: 6431323Stop: 6430649

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0562 translation of PA0562Homolog Bit Score 431.0

          
Other Homologs:  t_PA0562 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCATCCCATCGACGCACTGATTTCCGACTGCGACGGCGTCCTGGTCGACAGCGAGGTCATCGCCGAG 
CGCGTGATGTACGAGGCGCTCAGCGCCTACGCGCCGCTGGAGGAGCTGCAGCGCCTGCTGGAAGGCACCTTC 
GGCCTGACCAGCCGCGACATCCTCGATCGCGTCGAGAAGCACTTCGGCCTGCGCATCCCCGACAGCTTCAAC 
CGCGAGGTGCGCCAGCGCAGCGAGGAGATGGTCGCCCAGGTCCAACCCATTCCCGGCGCACGCGAGGCGCTG 
CTGGCCCTGGATCTGCCCGTCGCGGTGGCCTCCAACAGCCGCCGCCACAGCCTGGAGCGCTCGCTGGCGCGC 
GCCGGGCTCAGCGAACTGATCGGCGAACGCCTGGCCAGCGCCGATATGGTCGCCCTGCCCAAGCCCGCACCC 
GACGTCTACCTGCACGCCGCCAGCCTGCTCGGCGTCGCCCCCGAGCGTTGCCTGGTGGTGGAAGACAGCAGC 
ACCGGCACCCGCGCCGCCCTCGCCGCGGGGATGCGGGTGATCGGCTTCGTCGGCGCCGGGCACATTCCCGCC 
GGGCACGCCGAGGTACTGCGCGAGCTGGGCGCCATCGCCATCGTCGAGCACATGCGCGAACTGCCGGAGACC 
GTGGCGCGCCTGCGCCGGACAGTCTGA