ViewGene
Locus Name:
GeneID:
Location:

GeneID:3626
TrivialName: PA14_04310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04310
PAO1 Ortholog Locus:PA0330
Sequence Length:672
Protein Length:223
Start: 386001
Stop: 385330
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03719.1|AE004471_2 (AE004471) ribose 5-phosphate isomerase [Pseudomonas aeruginosa PAO1]
Identities = 223/223 (100%), Positives = 223/223 (100%)
Sequence:
ATGAACCAGGATCAGCTCAAGCAGGCAGTGGCACAGGCCGCCGTCGACCACATTCTTCCGCACCTCGACAGC
AAGAGCATCGTCGGCGTCGGCACAGGCTCCACCGCCAACTTCTTCATCGATGCCCTGGCCCGCCACAAGGCC
GAGTTCGACGGCGCAGTGGCCAGTTCGGAGGCCACCGCCAAGCGCCTGAAGGAACATGGCATCCCGGTCTAC
GAGCTGAACACGGTCAGCGAGCTGGAGTTCTACGTCGACGGCGCCGACGAAAGCAACGAGCGCCTGGAGCTG
ATCAAGGGCGGCGGTGCCGCGCTGACCCGCGAGAAGATCGTCGCCGCGGTGGCCAAGACCTTCATCTGCATC
GCCGATGCCAGCAAGCTGGTACCCATCCTCGGCCAGTTCCCGCTGCCGGTGGAGGTCATCCCGATGGCTCGC
AGCCACGTCGCCCGCCAACTGGTGAAGCTCGGCGGCGATCCGGTCTACCGCGAAGGCGTGCTGACCGACAAC
GGCAATATCATCCTCGACGTGCACAACCTGCGCATCGACAGCCCGGTGGAACTGGAAGAGAAGATCAACGCC
ATCGTCGGCGTGGTCACCAACGGCCTGTTCGCCGCCCGCCCGGCCGACCTGCTGCTGCTCGGCACCGCCGAC
GGCGTCAAGACCCTCAAGGCCTGA
Translation:
MNQDQLKQAVAQAAVDHILPHLDSKSIVGVGTGSTANFFIDALARHKAEFDGAVASSEATAKRLKEHGIPVY
ELNTVSELEFYVDGADESNERLELIKGGGAALTREKIVAAVAKTFICIADASKLVPILGQFPLPVEVIPMAR
SHVARQLVKLGGDPVYREGVLTDNGNIILDVHNLRIDSPVELEEKINAIVGVVTNGLFAARPADLLLLGTAD
GVKTLKA*
AnnotationID:3634GeneID:3626
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:15
Gene Name:rpiA
Confidence Code:2
GeneProduct:ribose 5-phosphate isomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0120,pfam06026
Secondary Functional Category(ies):central intermediary metabolism
EC Number:5.3.1.6
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70715.1|AE016715_4 (AE016793) ribose 5-phosphate isomerase [Pseudomonas putida KT2440]
          Length = 224

 Score =  380 bits (976), Expect = e-105
 Identities = 195/223 (87%), Positives = 209/223 (93%)

>gb|AAO58715.1| (AE016875) ribose 5-phosphate isomerase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 223

 Score =  379 bits (972), Expect = e-105
 Identities = 195/221 (88%), Positives = 204/221 (92%)

>gb|AAN54220.1|AE015559_4 (AE015559) ribose 5-phosphate isomerase [Shewanella oneidensis
           MR-1]
          Length = 219

 Score =  297 bits (761), Expect = 3e-80
 Identities = 153/223 (68%), Positives = 186/223 (83%), Gaps = 4/223 (1%)








 
Structural Features:
COG0120, RpiA, Ribose 5-phosphate isomerase 
[Carbohydrate transport and metabolism]
CD-Length = 227 residues, 100.0% aligned
Score =  272 bits (697), Expect = 2e-74
Identities = 129/231 (55%), Positives = 161/231 (69%), Gaps = 12/231 (5%)

pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A 
(phosphoriboisomerase A).
CD-Length = 173 residues,  99.4% aligned
Score =  222 bits (567), Expect = 3e-59
Identities = 95/173 (54%), Positives = 120/173 (69%), Gaps = 6/173 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24397




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33675




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3626_cdd.html


    		




 
URL:

















    ReferenceID:35424




  
Author/Investigator(s):
        Hove-Jensen B, Maigaard M.





  
Title:
        Escherichia coli rpiA gene encoding ribose phosphate isomerase A.




  
PubMed:
        8366047


MedLine:
        




    
Source:
J Bacteriol. 1993 Sep;175(17):5628-35.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8366047









           
Homologs By Global Alignment 

           

       



     
Gene ID:3626
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5812
                           PA0330_tr
                           translation of PA0330
                           223
                           99.99
                           99.99
                           0
                           1108.0
     

     
     
162120
                           gb|AAG03719.1|AE004471_2
                           (AE004471) ribose 5-phosphate isomerase [Pseudomonas aeruginosa PAO1]
                           223
                           99.99
                           99.99
                           0
                           1108.0
     

     
     
162122
                           gb|AAO58715.1|
                           (AE016875) ribose 5-phosphate isomerase [Pseudomonas syringae pv. tomato str. DC3000]
                           223
                           87.44
                           91.47
                           0
                           970.0
     

     
     
162121
                           gb|AAN70715.1|AE016715_4
                           (AE016793) ribose 5-phosphate isomerase [Pseudomonas putida KT2440]
                           224
                           87.05
                           93.30
                           1
                           976.0
     

     
     
162123
                           gb|AAN54220.1|AE015559_4
                           (AE015559) ribose 5-phosphate isomerase [Shewanella oneidensis MR-1]
                           223
                           68.60
                           83.40
                           4
                           764.0
     

     






      

          
GC ORFID: 46628How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0330Glimmer Score: 

          
Start: 6187343Stop: 6186672

          
Length: 672


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0330 translation of PA0330Homolog Bit Score 431.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6911 (ORF: BLASTX 378.0), t_PA0330 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCAGGATCAGCTCAAGCAGGCAGTGGCACAGGCCGCCGTCGACCACATTCTTCCGCACCTCGACAGC 
AAGAGCATCGTCGGCGTCGGCACAGGCTCCACCGCCAACTTCTTCATCGATGCCCTGGCCCGCCACAAGGCC 
GAGTTCGACGGCGCAGTGGCCAGTTCGGAGGCCACCGCCAAGCGCCTGAAGGAACATGGCATCCCGGTCTAC 
GAGCTGAACACGGTCAGCGAGCTGGAGTTCTACGTCGACGGCGCCGACGAAAGCAACGAGCGCCTGGAGCTG 
ATCAAGGGCGGCGGTGCCGCGCTGACCCGCGAGAAGATCGTCGCCGCGGTGGCCAAGACCTTCATCTGCATC 
GCCGATGCCAGCAAGCTGGTACCCATCCTCGGCCAGTTCCCGCTGCCGGTGGAGGTCATCCCGATGGCTCGC 
AGCCACGTCGCCCGCCAACTGGTGAAGCTCGGCGGCGATCCGGTCTACCGCGAAGGCGTGCTGACCGACAAC 
GGCAATATCATCCTCGACGTGCACAACCTGCGCATCGACAGCCCGGTGGAACTGGAAGAGAAGATCAACGCC 
ATCGTCGGCGTGGTCACCAACGGCCTGTTCGCCGCCCGCCCGGCCGACCTGCTGCTGCTCGGCACCGCCGAC 
GGCGTCAAGACCCTCAAGGCCTGA