ViewGene
Locus Name:
GeneID:
Location:

GeneID:3625
TrivialName: PA14_09790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09790
PAO1 Ortholog Locus:PA4182
Sequence Length:639
Protein Length:212
Start: 843736
Stop: 843098
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07569.1|AE004834_9 (AE004834) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 210/212 (99%), Positives = 211/212 (99%)
Sequence:
ATGTACCTGCCTTCGCATTTCGAAGAGTCCGACCCGCAGGCGCTGCACGCGCTGATCCGGGACTATCCGCTG
GGCCTGCTGGTCAGCCACGGCGAAGCGGGCCTGGACGCCAACCACCTGCCGTTCGAGCTGAGCCCGGCAAAG
GGCGCGCAAGGCACCCTGGAAGCCCATGTCGCGCGCAACAACCCGGTTTGGAGCGAGCTGCGCGACGGCGAC
GAGGTGCTGGTGGTGTTCCGCGCCGGCGATGCCTACATCTCGCCGCAGTGGTACCCGAGCAAGCAGGAGCAC
CACCGCCAGGTGCCGACCTGGAACTACCGGGTGGTCCACGCCCACGGCCGGGTGCGGATCCGCGACGACGAA
CGCTATGTGCGCGGACTGGTGGCGCGCCTGACCCGCACCCACGAGGCGACCCAGGAAAAGCCCTGGAAAATG
ACCGACGGCCCCGCCGACTACATCGACGAGATGCTCCGGCTGATCGTCGGCATCGAAATCGAGATCACCCGC
CTGGTCGGCAAGTTCAAGCTCAGCCAGAACAAGGAAGCCCGCGATATCCGCGGCGCCAGCGCAGCGCTGCTG
GCCCGCGGCGAACAGGCGATCGGCGCGGCCATGGACGATTGCGCCGCCCGGCGCGAGGGCTGA
Translation:
MYLPSHFEESDPQALHALIRDYPLGLLVSHGEAGLDANHLPFELSPAKGAQGTLEAHVARNNPVWSELRDGD
EVLVVFRAGDAYISPQWYPSKQEHHRQVPTWNYRVVHAHGRVRIRDDERYVRGLVARLTRTHEATQEKPWKM
TDGPADYIDEMLRLIVGIEIEITRLVGKFKLSQNKEARDIRGASAALLARGEQAIGAAMDDCAARREG*
AnnotationID:3633GeneID:3625
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:21
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4182
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2808,pfam04299
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70908.1|AE016735_1 (AE016794) transcriptional regulator, putative [Pseudomonas putida
           KT2440]
          Length = 209

 Score =  178 bits (452), Expect = 2e-44
 Identities = 93/197 (47%), Positives = 121/197 (61%)

>gb|AAO58924.1| (AE016876) transcriptional regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 212

 Score =  171 bits (433), Expect = 3e-42
 Identities = 86/191 (45%), Positives = 114/191 (59%)

>dbj|BAB47691.1| (AP002994) transcriptional regulator [Mesorhizobium loti]
          Length = 216

 Score =  171 bits (433), Expect = 3e-42
 Identities = 80/193 (41%), Positives = 120/193 (62%), Gaps = 2/193 (1%)








 
Structural Features:
COG2808, PaiB, Transcriptional regulator [Transcription]
CD-Length = 209 residues, 100.0% aligned
Score =  290 bits (744), Expect = 7e-80
Identities = 116/212 (54%), Positives = 141/212 (66%), Gaps = 3/212 (1%)

pfam04299, Neg_reg, Negative transcriptional regulator.
CD-Length = 168 residues, 100.0% aligned
Score =  239 bits (610), Expect = 2e-64
Identities = 94/169 (55%), Positives = 115/169 (68%), Gaps = 1/169 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7253




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24395




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36898




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3625_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3625
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5811
                           PA4182_tr
                           translation of PA4182
                           212
                           99.05
                           99.52
                           0
                           1107.0
     

     
     
162105
                           gb|AAG07569.1|AE004834_9
                           (AE004834) hypothetical protein PA4182 [Pseudomonas aeruginosa PAO1]
                           212
                           99.05
                           99.52
                           0
                           1107.0
     

     
     
162106
                           emb|CAD17840.1|
                           (AL646080) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           213
                           65.72
                           77.93
                           2
                           757.0
     

     
     
162107
                           emb|CAE32852.1|
                           (BX640444) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           212
                           60.84
                           71.69
                           5
                           671.0
     

     
     
162108
                           emb|CAE36594.1|
                           (BX640427) conserved hypothetical protein [Bordetella parapertussis]
                           212
                           60.84
                           71.69
                           5
                           669.0
     

     






      

          
GC ORFID: 46627How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4182Glimmer Score: 

          
Start: 4110201Stop: 4110839

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4182 translation of PA4182Homolog Bit Score 431.0

          
Other Homologs:  t_PA4182 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACCTGCCTTCGCATTTCGAAGAGTCCGACCCGCAGGCGCTGCACGCGCTGATCCGGGACTATCCGCTG 
GGCCTGCTGGTCAGCCACGGCGAAGCGGGCCTGGACGCCAACCACCTGCCGTTCGAGCTGAGCCCGGCAAAG 
GGCGCGCAAGGCACCCTGGAAGCCCATGTCGCGCGCAACAACCCGGTTTGGAGCGAGCTGCGCGACGGCGAC 
GAGGTGCTGGTGGTGTTCCGCGCCGGCGATGCCTACATCTCGCCGCAGTGGTACCCGAGCAAGCAGGAGCAC 
CACCGCCAGGTGCCGACCTGGAACTACCGGGTGGTCCACGCCCACGGCCGGGTGCGGATCCGCGACGACGAA 
CGCTATGTGCGCGGACTGGTGGCGCGCCTGACCCGCACCCACGAGGCGACCCAGGAAAAGCCCTGGAAAATG 
ACCGACGGCCCCGCCGACTACATCGACGAGATGCTCCGGCTGATCGTCGGCATCGAAATCGAGATCACCCGC 
CTGGTCGGCAAGTTCAAGCTCAGCCAGAACAAGGAAGCCCGCGATATCCGCGGCGCCAGCGCAGCGCTGCTG 
GCCCGCGGCGAACAGGCGATCGGCGCGGCCATGGACGATTGCGCCGCCCGGCGCGAGGGCTGA