ViewGene
Locus Name:
GeneID:
Location:

GeneID:3624
TrivialName: PA14_47820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47820
PAO1 Ortholog Locus:PA1269
Sequence Length:669
Protein Length:222
Start: 4255428
Stop: 4256096
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04658.1|AE004556_8 (AE004556) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 218/222 (98%), Positives = 219/222 (98%)
Sequence:
ATGCTCAACGCCCCTAACCTGGGCATCGCCCCTTCGGCCTCCGAGATCATCGCCAAGCACCTGCGCGAAGCG
ATCATCGCCGGGCATTTCGCCGAGGACGAACCGATCCGCCAGGACGACATCGCGCAACTCTTCAATGTCAGC
AAGATTCCCGTCCGCGAGGCCCTCAAGCGCCTGGAAGCGGAAGGCCTGGTGCTGTTCCAGCGCAACAAGGGC
GCGGTGGTGACGCGTATTTCCGAACCGGAACTGGCGCAGATGTTCGAAGTGCGGGTGCTGCTCGAGGCGCAG
GCGATCCGCCTGGCGGTGCCGAACATGGACGAGACCACCTTCGCCCGCGCCGAGGCGATCTGCGCCGACTTC
GTCGGCGAAGACAACGTCGGACGCTGGGCCGAACTCAACTGGCAACTGCACGCCTGCCTCTACGAACCGGCA
CAGCGGCCGTTCCTGGTCAACCTGATCCGCTCCATCCACGACAAGCTGGAACGTTACCTGCGCATGCAGATG
AGCCTGTCCGAAGGCAAGCAGCGCGCCGACCAGGAACACCGCGAGATCGTCGCCGCCTGTCGCGCCGGCGAT
GCTGAACAGGCCGCGGCACTGATCGAGGCACATATCGTCGGGGTCTGCCGGACCCTCTACGAACACCTGCCG
AACCGCCCGGCCAGCACCTGA
Translation:
MLNAPNLGIAPSASEIIAKHLREAIIAGHFAEDEPIRQDDIAQLFNVSKIPVREALKRLEAEGLVLFQRNKG
AVVTRISEPELAQMFEVRVLLEAQAIRLAVPNMDETTFARAEAICADFVGEDNVGRWAELNWQLHACLYEPA
QRPFLVNLIRSIHDKLERYLRMQMSLSEGKQRADQEHREIVAACRAGDAEQAAALIEAHIVGVCRTLYEHLP
NRPAST*
AnnotationID:3632GeneID:3624
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 14:02:36
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1269
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1802
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE30756.1| (BX640437) probable transcriptional regulator [Bordetella
           bronchiseptica]
          Length = 224

 Score =  167 bits (423), Expect = 4e-41
 Identities = 83/196 (42%), Positives = 127/196 (64%)

>gb|AAN55868.1|AE015724_1 (AE015724) transcriptional regulator, GntR family [Shewanella
           oneidensis MR-1]
          Length = 223

 Score =  159 bits (402), Expect = 1e-38
 Identities = 76/202 (37%), Positives = 126/202 (62%), Gaps = 4/202 (1%)








 
Structural Features:
COG1802, GntR, Transcriptional regulators [Transcription]
CD-Length = 230 residues,  93.0% aligned
Score =  146 bits (369), Expect = 2e-36
Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 3/214 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7251




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24393




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37520




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3624_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3624
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5810
                           PA1269_tr
                           translation of PA1269
                           222
                           98.19
                           98.64
                           0
                           1109.0
     

     
     
162100
                           gb|AAG04658.1|AE004556_8
                           (AE004556) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           222
                           98.19
                           98.64
                           0
                           1109.0
     

     
     
162101
                           emb|CAE30756.1|
                           (BX640437) probable transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           228
                           38.15
                           58.33
                           10
                           415.0
     

     
     
162102
                           emb|CAE44869.1|
                           (BX640412) probable transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           228
                           38.15
                           58.33
                           10
                           415.0
     

     
     
162103
                           emb|CAE39995.1|
                           (BX640423) probable transcriptional regulator [Bordetella parapertussis]
                           228
                           38.15
                           58.33
                           10
                           415.0
     

     






      

          
GC ORFID: 46626How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1269Glimmer Score: 

          
Start: 698481Stop: 697813

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1269 translation of PA1269Homolog Bit Score 431.0

          
Other Homologs:  t_PA1269 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAACGCCCCTAACCTGGGCATCGCCCCTTCGGCCTCCGAGATCATCGCCAAGCACCTGCGCGAAGCG 
ATCATCGCCGGGCATTTCGCCGAGGACGAACCGATCCGCCAGGACGACATCGCGCAACTCTTCAATGTCAGC 
AAGATTCCCGTCCGCGAGGCCCTCAAGCGCCTGGAAGCGGAAGGCCTGGTGCTGTTCCAGCGCAACAAGGGC 
GCGGTGGTGACGCGTATTTCCGAACCGGAACTGGCGCAGATGTTCGAAGTGCGGGTGCTGCTCGAGGCGCAG 
GCGATCCGCCTGGCGGTGCCGAACATGGACGAGACCACCTTCGCCCGCGCCGAGGCGATCTGCGCCGACTTC 
GTCGGCGAAGACAACGTCGGACGCTGGGCCGAACTCAACTGGCAACTGCACGCCTGCCTCTACGAACCGGCA 
CAGCGGCCGTTCCTGGTCAACCTGATCCGCTCCATCCACGACAAGCTGGAACGTTACCTGCGCATGCAGATG 
AGCCTGTCCGAAGGCAAGCAGCGCGCCGACCAGGAACACCGCGAGATCGTCGCCGCCTGTCGCGCCGGCGAT 
GCTGAACAGGCCGCGGCACTGATCGAGGCACATATCGTCGGGGTCTGCCGGACCCTCTACGAACACCTGCCG 
AACCGCCCGGCCAGCACCTGA