ViewGene
Locus Name:
GeneID:
Location:

GeneID:3623
TrivialName: PA14_59820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59820
PAO1 Ortholog Locus:
Sequence Length:651
Protein Length:216
Start: 5327953
Stop: 5328603
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84172.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 215/216 (99%), Positives = 216/216 (100%)
Sequence:
ATGTTCGGGTCGCTGATCGGCGCAATCATCGTGGAGTGGGTATGCCTGTATTTCTTCTGGCCTGACGCGGGC
TGGAAGCATGCCCAGGCCATGTTTGAGTACGAACTCAGTTGGCTGTCGCAGGGGCTGCTACACAGCGTCGTC
GTGCAGGAGCCAGGTCGAACCGCCACCTGGCTGGCCCAGTTGGCCTATGACTGGTTGTTCGTGAAGACCGGG
ATGGTCGACTGGATGACCAACATGACTACCATCGCGCAGGCCGGGCCACGGAGCCCGCTGGACGTTCGCTAT
CTCACCGCCCAGGGTGTCTCCACGCTGCAGAACTACGGCCTGGCCGCGCTGTACACGGTGCTGACATTCGTC
GTGCGCCTGGTGATCCTGGTCATGACGATCCCGTTATTCGTGATGGCCGCGTTCACCGGCCTGGTGGACGGC
CTGGTGCGCCGGGACCTGCGCAAGTTCGGCGCCGGCCGGGAGTCCAGCTACCTCTACCACAAGGCGCGCGGC
AGCATCATTCCGCTAGCGGTCGTCCCTTGGACGCTCTACCTGGCAATCCCCATCAGCATCAATCCCCTGCTC
ATCCTGTTGCCCTGCGCCGCGCTGCTCGGCGTAGCGGTATGCATCACAGCATCCACCTTCAAAAAGTACCTG
TAG
Translation:
MFGSLIGAIIVEWVCLYFFWPDAGWKHAQAMFEYELSWLSQGLLHSVVVQEPGRTATWLAQLAYDWLFVKTG
MVDWMTNMTTIAQAGPRSPLDVRYLTAQGVSTLQNYGLAALYTVLTFVVRLVILVMTIPLFVMAAFTGLVDG
LVRRDLRKFGAGRESSYLYHKARGSIIPLAVVPWTLYLAIPISINPLLILLPCAALLGVAVCITASTFKKYL
*
AnnotationID:3631GeneID:3623
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7249




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24391




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3623
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
162089
                           gb|AAP84162.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           216
                           99.07
                           99.07
                           0
                           1111.0
     

     
     
162088
                           gb|AAP84172.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           248
                           86.69
                           87.09
                           32
                           1121.0
     

     
     
162090
                           gb|AAO54414.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           249
                           60.64
                           71.88
                           33
                           819.0
     

     
     
162091
                           emb|CAC86812.1|
                           (AJ344068) hypothetical protein [Pseudomonas putida]
                           249
                           51.40
                           65.46
                           33
                           677.0
     

     
     
162092
                           gb|AAN62289.1|AF440524_76
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           253
                           49.40
                           66.40
                           41
                           663.0
     

     






      

          
GC ORFID: 46625How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL035Glimmer Score: 

          
Start: 4591632Stop: 4592282

          
Length: 651


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL035 216 Homolog: ORF105 / Hypothetical protein / P.putida / plasmid pWWO (CAC86812) translation of RL035Homolog Bit Score 432.0

          
Other Homologs:  t_RL046 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGGGTCGCTGATCGGCGCAATCATCGTGGAGTGGGTATGCCTGTATTTCTTCTGGCCTGACGCGGGC 
TGGAAGCATGCCCAGGCCATGTTTGAGTACGAACTCAGTTGGCTGTCGCAGGGGCTGCTACACAGCGTCGTC 
GTGCAGGAGCCAGGTCGAACCGCCACCTGGCTGGCCCAGTTGGCCTATGACTGGTTGTTCGTGAAGACCGGG 
ATGGTCGACTGGATGACCAACATGACTACCATCGCGCAGGCCGGGCCACGGAGCCCGCTGGACGTTCGCTAT 
CTCACCGCCCAGGGTGTCTCCACGCTGCAGAACTACGGCCTGGCCGCGCTGTACACGGTGCTGACATTCGTC 
GTGCGCCTGGTGATCCTGGTCATGACGATCCCGTTATTCGTGATGGCCGCGTTCACCGGCCTGGTGGACGGC 
CTGGTGCGCCGGGACCTGCGCAAGTTCGGCGCCGGCCGGGAGTCCAGCTACCTCTACCACAAGGCGCGCGGC 
AGCATCATTCCGCTAGCGGTCGTCCCTTGGACGCTCTACCTGGCAATCCCCATCAGCATCAATCCCCTGCTC 
ATCCTGTTGCCCTGCGCCGCGCTGCTCGGCGTAGCGGTATGCATCACAGCATCCACCTTCAAAAAGTACCTG 
TAG