ViewGene
Locus Name:
GeneID:
Location:

GeneID:3622
TrivialName: PA14_03840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03840
PAO1 Ortholog Locus:PA0294
Sequence Length:666
Protein Length:221
Start: 345824
Stop: 345159
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03683.1|AE004467_5 (AE004467) transcriptional regulator AguR [Pseudomonas aeruginosa PAO1]
Identities = 219/221 (99%), Positives = 221/221 (100%)
Sequence:
ATGCAGCCCACCTCGCCCACCCGCAAGCCCCGCGCCAGCAGCCAGGCCCGGATCGCCGCGATCCTCGACGCC
GCTCGCGGCCTGCTCGCCGACGAAGGCATCGGCGGCCTGACCATCTATAGCGTGGCCGAACGCGCGGAAATG
CCACCATCGTCGGTCTACCACTTCTTCCCCAGCGTGCCGGCCCTGCTCCAGGGGCTGACCGGCGAGGTCCAC
GCCGCCTTCCGCGCGTGCCTCGAACAGCCGGTGGACCATGCAGGCCTGCGCTGCTGGCGCGACCTGTCGCGG
ATCGTCGAGGAGCGCATGCTGGCGGTCTACGCCCGCGACGCGGCGGCCCGCCAACTGATTCTCGCCAGCCAC
GGCCTGGCCGAAGTCACCCAGGCCGATCGCCAACATGACGTGCAACTCGGCCAGGCCATGCGCGCCCTGTTC
GAGCGGCATTTCCTGCTGCCTCCGCTGCCGACCGATATCGAGATCTTCAGCCTGGCCATGGAGCTAGGCGAT
CGCGTCTACGCATTGTCGGTACAGCGTCACGGGATCATCGACGCACGCCTGGCGGAAGAAGGCATGCGGGTG
TTCGACGCCTACCTGGGGCTCTACCTGCCGCCGATCCTGGAAAAGCGTAGTGAACCATTAACCGGATTTATA
TCCGATTTAAATCGATAG
Translation:
MQPTSPTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVH
AAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALF
ERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLTGFI
SDLNR*
AnnotationID:3630GeneID:3622
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:19
Gene Name:aguR
Confidence Code:1
GeneProduct:transcriptional regulator AguR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58737.1| (AE016875) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 210

 Score =  283 bits (724), Expect = 5e-76
 Identities = 142/209 (67%), Positives = 167/209 (79%)

>gb|AAN65874.1|AE016215_9 (AE016774) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 210

 Score =  275 bits (704), Expect = 1e-73
 Identities = 136/209 (65%), Positives = 164/209 (78%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 45.0 bits (107), Expect = 7e-06
Identities = 18/47 (38%), Positives = 25/47 (53%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7247




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24389




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33628




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3622_cdd.html


    		




 
URL:

















    ReferenceID:35434




  
Author/Investigator(s):
        Nakada Y, Jiang Y, Nishijyo T, Itoh Y, Lu CD.





  
Title:
        Molecular characterization and regulation of the aguBA operon, responsible for agmatine utilization in Pseudomonas aeruginosa PAO1.




  
PubMed:
        11673419


MedLine:
        




    
Source:
J Bacteriol. 2001 Nov;183(22):6517-24.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11673419









           
Homologs By Global Alignment 

           

       



     
Gene ID:3622
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5809
                           PA0294_tr
                           translation of PA0294
                           221
                           99.09
                           99.99
                           0
                           1112.0
     

     
     
162085
                           gb|AAG03683.1|AE004467_5
                           (AE004467) transcriptional regulator AguR [Pseudomonas aeruginosa PAO1]
                           221
                           99.09
                           99.99
                           0
                           1112.0
     

     
     
162086
                           gb|AAO58737.1|
                           (AE016875) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           221
                           64.25
                           75.56
                           11
                           722.0
     

     
     
162087
                           gb|AAN65874.1|AE016215_9
                           (AE016774) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           221
                           61.53
                           74.20
                           11
                           704.0
     

     






      

          
GC ORFID: 46624How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0294Glimmer Score: 

          
Start: 6147165Stop: 6146500

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0294 translation of PA0294Homolog Bit Score 432.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6922 (ORF: BLASTX 287.0), t_PA0295 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCCCACCTCGCCCACCCGCAAGCCCCGCGCCAGCAGCCAGGCCCGGATCGCCGCGATCCTCGACGCC 
GCTCGCGGCCTGCTCGCCGACGAAGGCATCGGCGGCCTGACCATCTATAGCGTGGCCGAACGCGCGGAAATG 
CCACCATCGTCGGTCTACCACTTCTTCCCCAGCGTGCCGGCCCTGCTCCAGGGGCTGACCGGCGAGGTCCAC 
GCCGCCTTCCGCGCGTGCCTCGAACAGCCGGTGGACCATGCAGGCCTGCGCTGCTGGCGCGACCTGTCGCGG 
ATCGTCGAGGAGCGCATGCTGGCGGTCTACGCCCGCGACGCGGCGGCCCGCCAACTGATTCTCGCCAGCCAC 
GGCCTGGCCGAAGTCACCCAGGCCGATCGCCAACATGACGTGCAACTCGGCCAGGCCATGCGCGCCCTGTTC 
GAGCGGCATTTCCTGCTGCCTCCGCTGCCGACCGATATCGAGATCTTCAGCCTGGCCATGGAGCTAGGCGAT 
CGCGTCTACGCATTGTCGGTACAGCGTCACGGGATCATCGACGCACGCCTGGCGGAAGAAGGCATGCGGGTG 
TTCGACGCCTACCTGGGGCTCTACCTGCCGCCGATCCTGGAAAAGCGTAGTGAACCATTAACCGGATTTATA 
TCCGATTTAAATCGATAG