ViewGene
Locus Name:
GeneID:
Location:

GeneID:3621
TrivialName: PA14_01470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01470
PAO1 Ortholog Locus:PA0120
Sequence Length:687
Protein Length:228
Start: 138130
Stop: 138816
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03510.1|AE004450_5 (AE004450) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 228/228 (100%), Positives = 228/228 (100%)
Sequence:
ATGTTTTCTTCGTCCAAGCTGGTCAACGCGGTTGCCCAGCGCCTGCTCGACACCATCGAGCAGGGTCGCTGG
GTCGCCGGCCAGATGTTGCCCGGCCAGCGCGAGCTGGCTGAGCAGATGGAAATCAGCCGGCCGAGCCTGCGC
GAGGCGATCATGGTCCTGGAGACCCTGGGCGTGGTCCGTTCGCTGCCGGGCAAGGGCGTGATGGTCCTCGAA
CGCAGCGAGCCGCTGCGCGAGGTCGCGGCGCCCGGCGAGGCGACCATGGAAGACGTCCTGCAACTGCGCTAT
GCGCTGGAGCCGTTCATCGTCGGCATCGTCGCGCAGAGCGCCGGGGCGGCGGAGATCAGCGAACTGCGGCTG
TTGCTGCTGGACCTGCGCGAAGCGGTCGAGGATGGCGACCCGCAGGCTCTGGTGGAGGCCTACACGGCCTTC
CACCGGCGCCTGGTGAAGCTCACCTCGAACCCGATCTTCCTCAGCGTTTCCGAACAGATCGGCAGCGCCCTG
GAACGCAGCGACAACCTGGTCCGCCGCCAGCCGGAATACGCCGAGGAGATCCTCCAGGAACACGACGCCATC
CTCCGCGCGATCCGCCAGCACGACAGCGAGCGGGCGAGCCAGGCGATGCGCCAGCACATCCTCAACGAAGGC
GCGCGCCTGAACATCGACCTGCGCTTGCCGCAGGTCTGA
Translation:
MFSSSKLVNAVAQRLLDTIEQGRWVAGQMLPGQRELAEQMEISRPSLREAIMVLETLGVVRSLPGKGVMVLE
RSEPLREVAAPGEATMEDVLQLRYALEPFIVGIVAQSAGAAEISELRLLLLDLREAVEDGDPQALVEAYTAF
HRRLVKLTSNPIFLSVSEQIGSALERSDNLVRRQPEYAEEILQEHDAILRAIRQHDSERASQAMRQHILNEG
ARLNIDLRLPQV*
AnnotationID:3629GeneID:3621
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:41
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0120
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2186
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67867.1|AE016418_7 (AE016782) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 232

 Score =  241 bits (615), Expect = 2e-63
 Identities = 124/226 (54%), Positives = 167/226 (73%)








 
Structural Features:
COG2186, FadR, Transcriptional regulators [Transcription]
CD-Length = 241 residues,  95.4% aligned
Score =  142 bits (359), Expect = 4e-35
Identities = 79/232 (34%), Positives = 115/232 (49%), Gaps = 12/232 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7245




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24387




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33448




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3621_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3621
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5808
                           PA0120_tr
                           translation of PA0120
                           228
                           99.99
                           99.99
                           0
                           1111.0
     

     
     
162083
                           gb|AAG03510.1|AE004450_5
                           (AE004450) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           228
                           99.99
                           99.99
                           0
                           1111.0
     

     
     
162084
                           gb|AAN67867.1|AE016418_7
                           (AE016782) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           232
                           53.44
                           71.98
                           4
                           613.0
     

     






      

          
GC ORFID: 46623How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0120Glimmer Score: 

          
Start: 5939469Stop: 5940155

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0120 translation of PA0120Homolog Bit Score 432.0

          
Other Homologs:  t_PA0120 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTTCTTCGTCCAAGCTGGTCAACGCGGTTGCCCAGCGCCTGCTCGACACCATCGAGCAGGGTCGCTGG 
GTCGCCGGCCAGATGTTGCCCGGCCAGCGCGAGCTGGCTGAGCAGATGGAAATCAGCCGGCCGAGCCTGCGC 
GAGGCGATCATGGTCCTGGAGACCCTGGGCGTGGTCCGTTCGCTGCCGGGCAAGGGCGTGATGGTCCTCGAA 
CGCAGCGAGCCGCTGCGCGAGGTCGCGGCGCCCGGCGAGGCGACCATGGAAGACGTCCTGCAACTGCGCTAT 
GCGCTGGAGCCGTTCATCGTCGGCATCGTCGCGCAGAGCGCCGGGGCGGCGGAGATCAGCGAACTGCGGCTG 
TTGCTGCTGGACCTGCGCGAAGCGGTCGAGGATGGCGACCCGCAGGCTCTGGTGGAGGCCTACACGGCCTTC 
CACCGGCGCCTGGTGAAGCTCACCTCGAACCCGATCTTCCTCAGCGTTTCCGAACAGATCGGCAGCGCCCTG 
GAACGCAGCGACAACCTGGTCCGCCGCCAGCCGGAATACGCCGAGGAGATCCTCCAGGAACACGACGCCATC 
CTCCGCGCGATCCGCCAGCACGACAGCGAGCGGGCGAGCCAGGCGATGCGCCAGCACATCCTCAACGAAGGC 
GCGCGCCTGAACATCGACCTGCGCTTGCCGCAGGTCTGA