ViewGene
Locus Name:
GeneID:
Location:

GeneID:3620
TrivialName: PA14_72630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72630
PAO1 Ortholog Locus:PA5504
Sequence Length:678
Protein Length:225
Start: 6469554
Stop: 6470231
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08889.1|AE004963_2 (AE004963) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 225/225 (100%), Positives = 225/225 (100%)
Sequence:
ATGGACTTCTTCGAAACCATGAGCTTCGCCAACATCGACTGGTACGAAATCTGGCTGGCCAGCGTCGACACC
TTCTGGATGCTCGGCGGTTCGCTGCTGTTCACGGTGGTCCTCGGCCTGCCCCTCGGCGTCCTGCTGTTCCTT
ACCGGGCCACGGCAGATGTTCGAGCAGAAGGCGGTCTACACCCTGCTCTCGCTAGTGGTGAACATCCTCCGT
TCGTTGCCGTTCATCATCCTGCTGATCGTGATGATCCCGCTGACCGTACTGATCACCGGTACCTCGCTGGGC
GTCGCCGGGGCCATCCCGCCGCTGGTGGTGGGCGCCACGCCGTTCTTCGCGCGCCTGGTGGAAACCGCGCTG
CGCGAGGTCGACAAGGGCATCATCGAGGCAACCCAGGCGATGGGCGCCAGCACCCGGCAGATCATCTGGAAC
GCCCTGCTGCCGGAAGCCCGGCCGGGCATCATCGCCGCCATCACCGTCACCGCCATCACCCTGGTCTCGTAC
ACCGCGATGGCCGGAGTGGTCGGCGCCGGCGGGCTGGGCGACCTGGCGATCCGCTTCGGCTATCAGCGCTTC
CAGACCGACGTGATGGTGGTCACCGTGGTGATGCTGCTGATCCTCGTCCAGATTCTGCAAACCGTGGGCGAC
AAGCTGGTGGTGCACTTCTCGCGCAAGTAA
Translation:
MDFFETMSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSLVVNILR
SLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKGIIEATQAMGASTRQIIWN
ALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIRFGYQRFQTDVMVVTVVMLLILVQILQTVGD
KLVVHFSRK*
AnnotationID:3628GeneID:3620
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:54
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:yaeE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2011
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65747.1|AE016200_11 (AE016774) ABC transporter, permease protein [Pseudomonas putida
           KT2440]
          Length = 223

 Score =  373 bits (958), Expect = e-103
 Identities = 194/217 (89%), Positives = 206/217 (94%)

>gb|AAO58687.1| (AE016875) D-methionine ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 224

 Score =  332 bits (852), Expect = 8e-91
 Identities = 167/225 (74%), Positives = 196/225 (87%), Gaps = 1/225 (0%)

>gb|AAK24635.1| (AE005934) ABC transporter, permease protein [Caulobacter
           crescentus CB15]
          Length = 224

 Score =  312 bits (799), Expect = 1e-84
 Identities = 160/220 (72%), Positives = 186/220 (84%)








 
Structural Features:
COG2011, AbcD, ABC-type metal ion transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 222 residues,  99.5% aligned
Score =  271 bits (696), Expect = 3e-74
Identities = 134/221 (60%), Positives = 170/221 (76%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7243




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24385




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33260




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3620_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3620
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5806
                           PA5504_tr
                           translation of PA5504
                           225
                           99.99
                           99.99
                           0
                           1111.0
     

     
     
161971
                           gb|AAG08889.1|AE004963_2
                           (AE004963) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           225
                           99.99
                           99.99
                           0
                           1111.0
     

     
     
161972
                           gb|AAN65747.1|AE016200_11
                           (AE016774) ABC transporter, permease protein [Pseudomonas putida KT2440]
                           228
                           85.52
                           91.66
                           8
                           955.0
     

     
     
161973
                           gb|AAO58687.1|
                           (AE016875) D-methionine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           225
                           74.22
                           87.11
                           1
                           854.0
     

     
     
161974
                           gb|AAK24635.1|
                           (AE005934) ABC transporter, permease protein [Caulobacter crescentus CB15]
                           225
                           71.11
                           82.66
                           1
                           792.0
     

     






      

          
GC ORFID: 46622How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5504Glimmer Score: 

          
Start: 5733243Stop: 5733920

          
Length: 678


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5504 translation of PA5504Homolog Bit Score 432.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3199 (ORF: BLASTX 332.0), t_PA2351 (ORF: BLASTX 221.0), psyr_15may02_Scaffold2_revised_gene3835 (ORF: BLASTX 209.0), t_PA5504 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTTCTTCGAAACCATGAGCTTCGCCAACATCGACTGGTACGAAATCTGGCTGGCCAGCGTCGACACC 
TTCTGGATGCTCGGCGGTTCGCTGCTGTTCACGGTGGTCCTCGGCCTGCCCCTCGGCGTCCTGCTGTTCCTT 
ACCGGGCCACGGCAGATGTTCGAGCAGAAGGCGGTCTACACCCTGCTCTCGCTAGTGGTGAACATCCTCCGT 
TCGTTGCCGTTCATCATCCTGCTGATCGTGATGATCCCGCTGACCGTACTGATCACCGGTACCTCGCTGGGC 
GTCGCCGGGGCCATCCCGCCGCTGGTGGTGGGCGCCACGCCGTTCTTCGCGCGCCTGGTGGAAACCGCGCTG 
CGCGAGGTCGACAAGGGCATCATCGAGGCAACCCAGGCGATGGGCGCCAGCACCCGGCAGATCATCTGGAAC 
GCCCTGCTGCCGGAAGCCCGGCCGGGCATCATCGCCGCCATCACCGTCACCGCCATCACCCTGGTCTCGTAC 
ACCGCGATGGCCGGAGTGGTCGGCGCCGGCGGGCTGGGCGACCTGGCGATCCGCTTCGGCTATCAGCGCTTC 
CAGACCGACGTGATGGTGGTCACCGTGGTGATGCTGCTGATCCTCGTCCAGATTCTGCAAACCGTGGGCGAC 
AAGCTGGTGGTGCACTTCTCGCGCAAGTAA