ViewGene

Locus Name:
GeneID:
Location:

GeneID:3619
TrivialName: PA14_63570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63570
PAO1 Ortholog Locus:PA4810
Sequence Length:627
Protein Length:208
Start: 5668258
Stop: 5667632
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08196.1|AE004894_2 (AE004894) nitrate-inducible formate dehydrogenase, gamma subunit [Pseudomonas aeruginosa PAO1]
Identities = 208/208 (100%), Positives = 208/208 (100%)
Sequence:
ATGAAAAATGAAATCCAGCGCTACAACGCCAACGAGCGCAGCAACCACTGGGCCGTGGCGATCCTGTTCTTC
ATGGCCGGGCTGTCCGGGCTGGCGCTGTTCCACCCGGCGCTGTTCTGGCTGACCAACCTGTTCGGCGGCGGT
CCCTGGACGCGTATCCTGCACCCCTTCCTGGGGCTGGCGATGTTCGTCTTCTTCCTCGGCCTGGTGGTGCGC
TTCGCTCACCACAACCGGGTGCAGAAGAGCGATATCCAGTGGCTCAAGCAGTGGCGCGACGTGGTCAGCAAC
CGCGAGGAGAACCTCCCGGAAGTCGGCCGCTACAACGCCGGGCAGAAGCTGCTGTTCTGGGTGCTGCTGCTG
AGCATGCTGACCCTGCTGGTCACCGGCATCGTGATCTGGCGCCAGTACTTCAGCGCCTGGTTCGGCATCGAG
GCGATCCGCCTGTCGGCGCTCCTGCACGCCTTCGCCGCCTTCGTCCTGATCGCCAGCATCATCGTGCATATC
TACGCCGGCATCTGGGTCAAGGGCTCGATGGGCGCGATGCTCTACGGCAAGGTCAGCCGCGCCTGGGCGCGC
AAGCACCATAACGGCTGGCTGAAGGAAGTCGGCAAGGGCGAGGAGCACTGA
Translation:
MKNEIQRYNANERSNHWAVAILFFMAGLSGLALFHPALFWLTNLFGGGPWTRILHPFLGLAMFVFFLGLVVR
FAHHNRVQKSDIQWLKQWRDVVSNREENLPEVGRYNAGQKLLFWVLLLSMLTLLVTGIVIWRQYFSAWFGIE
AIRLSALLHAFAAFVLIASIIVHIYAGIWVKGSMGAMLYGKVSRAWARKHHNGWLKEVGKGEEH*
AnnotationID:3627GeneID:3619
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:11
Gene Name:fdnI
Confidence Code:2
GeneProduct:nitrate-inducible formate dehydrogenase, gamma subunit
Cell Localization:()
Synonyms:fdoI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:formate dehydrogenase, cytochrome b556 subunit
Functional Category Confidence Code:5
COGs:COG2864
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66120.1|AE016240_5 (AE016775) formate dehydrogenase, cytochrome b556 subunit
           [Pseudomonas putida KT2440]
          Length = 218

 Score =  315 bits (807), Expect = 1e-85
 Identities = 149/198 (75%), Positives = 170/198 (85%)
Structural Features:
COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase 
[Energy production and conversion]
CD-Length = 218 residues,  95.9% aligned
Score =  229 bits (584), Expect = 3e-61
Identities = 115/210 (54%), Positives = 143/210 (68%), Gaps = 3/210 (1%)

Genomic Context:
Comment:
ReferenceID:7241
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24383
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35240
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3619_cdd.html
URL:
ReferenceID:35991
Author/Investigator(s): Plunkett G 3rd, Burland V, Daniels DL, Blattner FR.
Title: Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
PubMed: 8346018
MedLine:
Source:
Nucleic Acids Res. 1993 Jul 25;21(15):3391-8.
Reference Type:Journal
Data:
URL:Nucleic Acids Res. 1993 Jul 25;21(15):3391-8.
ReferenceID:35993
Author/Investigator(s): Berg BL, Li J, Heider J, Stewart V.
Title: Nitrate-inducible formate dehydrogenase in Escherichia coli K-12. I. Nucleotide sequence of the fdnGHI operon and evidence that opal (UGA) encodes selenocysteine.
PubMed: 1834669
MedLine:
Source:
J Biol Chem. 1991 Nov 25;266(33):22380-5.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1834669
Homologs By Global Alignment
Gene ID:3619

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5805 PA4810_tr translation of PA4810 208 99.99 99.99 0 1112.0
161942 gb|AAG08196.1|AE004894_2 (AE004894) nitrate-inducible formate dehydrogenase, gamma subunit [Pseudomonas aeruginosa PAO1] 208 99.99 99.99 0 1112.0
161943 gb|AAN66120.1|AE016240_5 (AE016775) formate dehydrogenase, cytochrome b556 subunit [Pseudomonas putida KT2440] 219 68.49 78.99 12 799.0
161944 gb|AAQ61503.1| (AE016923) formate dehydrogenase [Chromobacterium violaceum ATCC 12472] 210 52.38 68.57 7 576.0
161955 emb|CAC93511.1| (AJ414160) formate dehydrogenase, cytochrome b556 protein [Yersinia pestis CO92] 226 45.13 60.61 20 529.0
GC ORFID: 46621How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4810Glimmer Score:
Start: 4931938Stop: 4931312
Length: 627
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4810 translation of PA4810Homolog Bit Score 432.0
Other Homologs: t_PA4810 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAAATGAAATCCAGCGCTACAACGCCAACGAGCGCAGCAACCACTGGGCCGTGGCGATCCTGTTCTTC
ATGGCCGGGCTGTCCGGGCTGGCGCTGTTCCACCCGGCGCTGTTCTGGCTGACCAACCTGTTCGGCGGCGGT
CCCTGGACGCGTATCCTGCACCCCTTCCTGGGGCTGGCGATGTTCGTCTTCTTCCTCGGCCTGGTGGTGCGC
TTCGCTCACCACAACCGGGTGCAGAAGAGCGATATCCAGTGGCTCAAGCAGTGGCGCGACGTGGTCAGCAAC
CGCGAGGAGAACCTCCCGGAAGTCGGCCGCTACAACGCCGGGCAGAAGCTGCTGTTCTGGGTGCTGCTGCTG
AGCATGCTGACCCTGCTGGTCACCGGCATCGTGATCTGGCGCCAGTACTTCAGCGCCTGGTTCGGCATCGAG
GCGATCCGCCTGTCGGCGCTCCTGCACGCCTTCGCCGCCTTCGTCCTGATCGCCAGCATCATCGTGCATATC
TACGCCGGCATCTGGGTCAAGGGCTCGATGGGCGCGATGCTCTACGGCAAGGTCAGCCGCGCCTGGGCGCGC
AAGCACCATAACGGCTGGCTGAAGGAAGTCGGCAAGGGCGAGGAGCACTGA