ViewGene
Locus Name:
GeneID:
Location:

GeneID:3618
TrivialName: PA14_13660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13660
PAO1 Ortholog Locus:PA3885
Sequence Length:657
Protein Length:218
Start: 1174823
Stop: 1174167
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07272.1|AE004805_10 (AE004805) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 214/218 (98%), Positives = 216/218 (99%)
Sequence:
ATGCACCGTTCACCGCTCGCCTGGCTCCGCCTGCTCCTCGCCGCCGTGCTCGGCGCCTTCCTGCTCGGCGGC
CCGCTGCATGCCGCCGAGACTGCCGCCCCGCGTTCGCCAGCCTGGGCGCAAGCGGTCGACCCGTCGATCAAC
CTCTACCGCATGAGCCCCACCCTCTATCGCAGCGCGCTGCCCAACGCACAGAGCGTCGCGCTGCTGCAACGC
CTGCAGGTGAAGACGGTGGTCAGCTTCATCAAGGACGACGACCGCGCCTGGCTGGGCCAGGCTCCGGTGCGG
GTGGTCAGCCTGCCGACCCACGCCGACCGGGTCGACGACGCCGAGGTGCTCAGCGTCCTCCGCCAGTTGCAG
GCCGCCGAGCGCGAAGGCCCGGTACTGATGCACTGCAAGCACGGCAACAACCGCACCGGACTGTTCGCCGCC
ATGTACCGCATCGTCGTGCAGGGCTGGGACAAGCAGGCCGCGCTGGAGGAAATGCAGCGCGGCGGGTTCGGC
GACGAGGACGACATGCGCGACGCCAGCGCCTATGTGCGCGGCGCCGACGTCGACGGCCTGCGCCTGGCGATG
GCCAACGGCGAATGCAGCCCATCGCGCTTCGCCCTCTGCCATGTGCGCGAGTGGATGGCCCAGGCGCTCGAC
CGGCCGTAA
Translation:
MHRSPLAWLRLLLAAVLGAFLLGGPLHAAETAAPRSPAWAQAVDPSINLYRMSPTLYRSALPNAQSVALLQR
LQVKTVVSFIKDDDRAWLGQAPVRVVSLPTHADRVDDAEVLSVLRQLQAAEREGPVLMHCKHGNNRTGLFAA
MYRIVVQGWDKQAALEEMQRGGFGDEDDMRDASAYVRGADVDGLRLAMANGECSPSRFALCHVREWMAQALD
RP*
AnnotationID:3626GeneID:3618
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 13:01:14
Gene Name:
Confidence Code:3
GeneProduct:putative protein phosphatase
Cell Localization:()
Synonyms:PA3885
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2365
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2365, Protein tyrosine/serine phosphatase 
[Signal transduction mechanisms]
CD-Length = 249 residues,  90.4% aligned
Score =  142 bits (360), Expect = 5e-35
Identities = 58/226 (25%), Positives = 85/226 (37%), Gaps = 9/226 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7239




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24381




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31681




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3618_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3618
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5804
                           PA3885_tr
                           translation of PA3885
                           218
                           98.16
                           99.08
                           0
                           1110.0
     

     
     
161941
                           gb|AAG07272.1|AE004805_10
                           (AE004805) hypothetical protein PA3885 [Pseudomonas aeruginosa PAO1]
                           218
                           98.16
                           99.08
                           0
                           1110.0
     

     






      

          
GC ORFID: 46620How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3885Glimmer Score: 

          
Start: 3779115Stop: 3779771

          
Length: 657


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3885 translation of PA3885Homolog Bit Score 432.0

          
Other Homologs:  t_PA3885 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCGTTCACCGCTCGCCTGGCTCCGCCTGCTCCTCGCCGCCGTGCTCGGCGCCTTCCTGCTCGGCGGC 
CCGCTGCATGCCGCCGAGACTGCCGCCCCGCGTTCGCCAGCCTGGGCGCAAGCGGTCGACCCGTCGATCAAC 
CTCTACCGCATGAGCCCCACCCTCTATCGCAGCGCGCTGCCCAACGCACAGAGCGTCGCGCTGCTGCAACGC 
CTGCAGGTGAAGACGGTGGTCAGCTTCATCAAGGACGACGACCGCGCCTGGCTGGGCCAGGCTCCGGTGCGG 
GTGGTCAGCCTGCCGACCCACGCCGACCGGGTCGACGACGCCGAGGTGCTCAGCGTCCTCCGCCAGTTGCAG 
GCCGCCGAGCGCGAAGGCCCGGTACTGATGCACTGCAAGCACGGCAACAACCGCACCGGACTGTTCGCCGCC 
ATGTACCGCATCGTCGTGCAGGGCTGGGACAAGCAGGCCGCGCTGGAGGAAATGCAGCGCGGCGGGTTCGGC 
GACGAGGACGACATGCGCGACGCCAGCGCCTATGTGCGCGGCGCCGACGTCGACGGCCTGCGCCTGGCGATG 
GCCAACGGCGAATGCAGCCCATCGCGCTTCGCCCTCTGCCATGTGCGCGAGTGGATGGCCCAGGCGCTCGAC 
CGGCCGTAA