ViewGene
Locus Name:
GeneID:
Location:

GeneID:3616
TrivialName: PA14_44980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44980
PAO1 Ortholog Locus:PA1504
Sequence Length:651
Protein Length:216
Start: 4010323
Stop: 4010973
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04893.1|AE004579_5 (AE004579) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 215/216 (99%), Positives = 215/216 (99%)
Sequence:
ATGACCAGCATCCGCGAGCGCAACAAGCGCCTGATCCTCCGCGCCGCCAGCGAGGAATTCGCCGACAAGGGC
TTCGCGGCGACCAAGACCAGCGACATCGCCGCCCGCGCCGGCCTGCCCAAGCCCAACGTCTACTACTACTTC
CAGTCCAAGGAAAACCTCTATCGCTGCGTGCTGGAAAGCATCGTCGAGCCGCTGCTGCAAGCGTCGGCGCCG
TTCCGCGTGGAAGACGACCCGCTGCTCGCCCTGCCCGCCTACATCCGCTCGAAGATCCGCATCTCCCGCGAG
CTGCCGCATGCCTCCAAGGTCTTCGCCAGCGAGATCATGCACGGCGCGCCGCACCTGCCGAAGGAATACCTC
GACGAACTGAACGCCCAGGCCCAGCGCAACGTCACCTGCCTGCAGACCTGGATCGACCGTGGCCAGCTCGCC
CCGGTGGACCCGCATCACCTGCTCTTCGCCATCTGGGCGGCGACCCAGACCTATGCCGACTTCGATTGGCAG
ATTTCCATCGTCACCGGCAAGGAACAGCTCAGCGACGCCGACTACGACGCTGCGGTGGAAACCATCACCCGC
CTGGTCCTGAAAGGCTGCGCGCCCGACGGGCAATCCGGCAAGAGCGCCGGCCGGCTTCGGCCGCTGCCGCTC
TGA
Translation:
MTSIRERNKRLILRAASEEFADKGFAATKTSDIAARAGLPKPNVYYYFQSKENLYRCVLESIVEPLLQASAP
FRVEDDPLLALPAYIRSKIRISRELPHASKVFASEIMHGAPHLPKEYLDELNAQAQRNVTCLQTWIDRGQLA
PVDPHHLLFAIWAATQTYADFDWQISIVTGKEQLSDADYDAAVETITRLVLKGCAPDGQSGKSAGRLRPLPL
*
AnnotationID:3624GeneID:3616
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:36
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA1504
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69875.1|AE016626_10 (AE016790) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 203

 Score =  316 bits (810), Expect = 5e-86
 Identities = 151/201 (75%), Positives = 175/201 (87%)

>gb|AAO57167.1| (AE016869) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 202

 Score =  306 bits (785), Expect = 4e-83
 Identities = 147/201 (73%), Positives = 171/201 (85%)

>gb|AAL20053.1| (AE008748) putative transcriptional repressor (TetR/AcrR family)
           [Salmonella typhimurium LT2]
          Length = 212

 Score =  152 bits (383), Expect = 2e-36
 Identities = 76/189 (40%), Positives = 112/189 (59%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues,  95.7% aligned
Score = 60.4 bits (147), Expect = 2e-10
Identities = 21/45 (46%), Positives = 28/45 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7235




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24377




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37325




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3616_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3616
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5798
                           PA1504_tr
                           translation of PA1504
                           216
                           99.53
                           99.53
                           0
                           1111.0
     

     
     
161891
                           gb|AAG04893.1|AE004579_5
                           (AE004579) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           216
                           99.53
                           99.53
                           0
                           1111.0
     

     
     
161892
                           gb|AAN69875.1|AE016626_10
                           (AE016790) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           216
                           69.90
                           81.01
                           13
                           809.0
     

     
     
161893
                           gb|AAO57167.1|
                           (AE016869) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           216
                           68.05
                           79.16
                           14
                           783.0
     

     
     
5799
                           PA1864_tr
                           translation of PA1864
                           218
                           50.00
                           66.51
                           4
                           530.0
     

     






      

          
GC ORFID: 46618How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1504Glimmer Score: 

          
Start: 943586Stop: 942936

          
Length: 651


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1504 translation of PA1504Homolog Bit Score 432.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene617 (ORF: BLASTX 311.0), t_PA1864 (ORF: BLASTX 209.0), t_PA0436 (ORF: BLASTX 168.0), psyr_15may02_Scaffold2_revised_gene3589 (ORF: BLASTX 166.0), t_PA0167 (ORF: BLASTX 165.0), t_PA1504 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGCATCCGCGAGCGCAACAAGCGCCTGATCCTCCGCGCCGCCAGCGAGGAATTCGCCGACAAGGGC 
TTCGCGGCGACCAAGACCAGCGACATCGCCGCCCGCGCCGGCCTGCCCAAGCCCAACGTCTACTACTACTTC 
CAGTCCAAGGAAAACCTCTATCGCTGCGTGCTGGAAAGCATCGTCGAGCCGCTGCTGCAAGCGTCGGCGCCG 
TTCCGCGTGGAAGACGACCCGCTGCTCGCCCTGCCCGCCTACATCCGCTCGAAGATCCGCATCTCCCGCGAG 
CTGCCGCATGCCTCCAAGGTCTTCGCCAGCGAGATCATGCACGGCGCGCCGCACCTGCCGAAGGAATACCTC 
GACGAACTGAACGCCCAGGCCCAGCGCAACGTCACCTGCCTGCAGACCTGGATCGACCGTGGCCAGCTCGCC 
CCGGTGGACCCGCATCACCTGCTCTTCGCCATCTGGGCGGCGACCCAGACCTATGCCGACTTCGATTGGCAG 
ATTTCCATCGTCACCGGCAAGGAACAGCTCAGCGACGCCGACTACGACGCTGCGGTGGAAACCATCACCCGC 
CTGGTCCTGAAAGGCTGCGCGCCCGACGGGCAATCCGGCAAGAGCGCCGGCCGGCTTCGGCCGCTGCCGCTC 
TGA