ViewGene
Locus Name:
GeneID:
Location:

GeneID:3614
TrivialName: PA14_47940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47940
PAO1 Ortholog Locus:PA1258
Sequence Length:666
Protein Length:221
Start: 4268057
Stop: 4268722
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04647.1|AE004555_7 (AE004555) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 221/221 (100%), Positives = 221/221 (100%)
Sequence:
ATGTTCGACTACACCTTCCACTGGCGCTCGGCGTTCAACGCCCTGCCGGAGATGCTCGCCGGCAGCCTGGTG
ACGCTCCAGGTCACCGCGCTGTCGATGCTCTTCGGCATCCTCATCGCCCTGCTCCTGGCCTTCGCCCGGCTC
GGCGGCAACCGCCCGCTGCGCGCCGCCGCCGGAGCCTGGATCTCCATCGCGCGGAATACCCCGGCGCTATTC
CAGATCTACATCCTCTACTTCGGCCTGGGCTCCTTCGGCCTGCACGTCAGTTCCTGGTTCGCCCTGCTCGCC
GGGGTCACCTTCAACAACGCCGGCTACCTCGCCGAGACCTTCCGCGGCGGCCTCCAGGCGGTGCCCGAGACC
CAGCTGCGGGCGGCCCGCTCGCTGGGCATGAGCGCGCCGCAGGCCTATCGCCTGGTGGTGATCCCGCAACTG
CTGCGGGTGGTGTTCTACCCGCTGACCAACCAGTTGGTCTGGGCCATGCTGATGACCTCCCTCGGCGTGGTG
GTGGGCCTGACCGACGACCTCACCGGCGTCACCCAGGCGCTCAACGTCAAGACCTTCCGCACCTTCGAATAC
TTCGCCCTGGCCGCCGTCCTCTACTTCGCCATGGCCAAGCTGCTGGTGCTGGCCGCCCGCCTGCTGGGCTGG
CGCCTGTTCCGTTACTGA
Translation:
MFDYTFHWRSAFNALPEMLAGSLVTLQVTALSMLFGILIALLLAFARLGGNRPLRAAAGAWISIARNTPALF
QIYILYFGLGSFGLHVSSWFALLAGVTFNNAGYLAETFRGGLQAVPETQLRAARSLGMSAPQAYRLVVIPQL
LRVVFYPLTNQLVWAMLMTSLGVVVGLTDDLTGVTQALNVKTFRTFEYFALAAVLYFAMAKLLVLAARLLGW
RLFRY*
AnnotationID:3622GeneID:3614
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 12:12:16
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA1258
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative amino acid ABC transporter permease protein
Functional Category Confidence Code:5
COGs:COG0765,COG4160,COG4215
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL45473.1| (AE009396) ABC transporter, membrane spanning protein [amino acid]
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 221

 Score =  296 bits (758), Expect = 6e-80
 Identities = 139/221 (62%), Positives = 178/221 (80%)

>emb|CAC48654.1| (AL603642) putative amino acid ABC transporter permease protein
           [Sinorhizobium meliloti]
          Length = 221

 Score =  292 bits (747), Expect = 1e-78
 Identities = 136/221 (61%), Positives = 174/221 (78%)






 
Structural Features:
COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  99.5% aligned
Score =  174 bits (442), Expect = 1e-44
Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  98.7% aligned
Score =  132 bits (335), Expect = 2e-32
Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  94.8% aligned
Score =  104 bits (262), Expect = 6e-24
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 18/220 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7231




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24373




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37541




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3614_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3614
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5796
                           PA1258_tr
                           translation of PA1258
                           221
                           99.99
                           99.99
                           0
                           1112.0
     

     
     
161810
                           gb|AAG04647.1|AE004555_7
                           (AE004555) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           221
                           99.99
                           99.99
                           0
                           1112.0
     

     
     
161811
                           gb|AAL45473.1|
                           (AE009396) ABC transporter, membrane spanning protein [amino acid] [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           221
                           62.89
                           80.54
                           0
                           758.0
     

     
     
161812
                           gb|AAK88771.1|
                           (AE008218) AGR_L_405p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           221
                           62.89
                           80.54
                           0
                           758.0
     

     
     
161813
                           emb|CAC48654.1|
                           (AL603642) putative amino acid ABC transporter permease protein [Sinorhizobium meliloti]
                           221
                           61.53
                           78.73
                           0
                           747.0
     

     






      

          
GC ORFID: 46616How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1258Glimmer Score: 

          
Start: 685852Stop: 685187

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1258 translation of PA1258Homolog Bit Score 432.0

          
Other Homologs:  t_PA1258 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGACTACACCTTCCACTGGCGCTCGGCGTTCAACGCCCTGCCGGAGATGCTCGCCGGCAGCCTGGTG 
ACGCTCCAGGTCACCGCGCTGTCGATGCTCTTCGGCATCCTCATCGCCCTGCTCCTGGCCTTCGCCCGGCTC 
GGCGGCAACCGCCCGCTGCGCGCCGCCGCCGGAGCCTGGATCTCCATCGCGCGGAATACCCCGGCGCTATTC 
CAGATCTACATCCTCTACTTCGGCCTGGGCTCCTTCGGCCTGCACGTCAGTTCCTGGTTCGCCCTGCTCGCC 
GGGGTCACCTTCAACAACGCCGGCTACCTCGCCGAGACCTTCCGCGGCGGCCTCCAGGCGGTGCCCGAGACC 
CAGCTGCGGGCGGCCCGCTCGCTGGGCATGAGCGCGCCGCAGGCCTATCGCCTGGTGGTGATCCCGCAACTG 
CTGCGGGTGGTGTTCTACCCGCTGACCAACCAGTTGGTCTGGGCCATGCTGATGACCTCCCTCGGCGTGGTG 
GTGGGCCTGACCGACGACCTCACCGGCGTCACCCAGGCGCTCAACGTCAAGACCTTCCGCACCTTCGAATAC 
TTCGCCCTGGCCGCCGTCCTCTACTTCGCCATGGCCAAGCTGCTGGTGCTGGCCGCCCGCCTGCTGGGCTGG 
CGCCTGTTCCGTTACTGA