ViewGene
Locus Name:
GeneID:
Location:

GeneID:3610
TrivialName: PA14_58260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58260
PAO1 Ortholog Locus:PA4490
Sequence Length:639
Protein Length:212
Start: 5189198
Stop: 5188560
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07878.1|AE004862_12 (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 210/212 (99%), Positives = 210/212 (99%)
Sequence:
GTGAGACGCCTGACTGCCTTCGGCCTGGCGCTGCTCCTGCTGGCCAGCGGCGTTGCCCGCGGCGAGCCCCCG
GTAGCGCTCGACCCGCAGCAATCGCAGGTATTCCGCGCCTGGTTCGTGCGCATCGCCCAGGAACAGTTGCGC
CAAGGGCCGAGTCCGCGCTGGCACCAGCAGGACTGCGCCGGCCTGGTGCGCTTCGCCGCCAACGAGGCGCTG
AAAGTCCACGATGGCAAGTGGCTGCGCGCCAACGGCCTGTCCAACCGCTACCTGCCCCCGGAGCTGGCGCTC
AGTCCCGAGCAACGGCGCCTGGCGCAGAACTGGCAGCAGGGTGGCGGCCAGGTCGGGCCCTACGTGAATGCG
ATCAAGCTGGTGCAGTTCAACAGTCGGCTGGTCGGCCGCGACCTCAACCAGGCGCGCCCCGGCGACCTGATG
TTCTACGACCAGGGCGACGACCAGCACCTGATGATCTGGATGGGCCGCTCCATCGCCTATCACACCGGCAGC
AGCACCCCGACCGATAACGGCATGCGCTCGGTCAGCCTGCAACAACTCATGACATGGAAGGACACCCGATGG
ATCCCCGACGAATCCAATCCCAACTTTATCGGCATCTATCGGCTGGCTTTCCTCTCTCAATGA
Translation:
MRRLTAFGLALLLLASGVARGEPPVALDPQQSQVFRAWFVRIAQEQLRQGPSPRWHQQDCAGLVRFAANEAL
KVHDGKWLRANGLSNRYLPPELALSPEQRRLAQNWQQGGGQVGPYVNAIKLVQFNSRLVGRDLNQARPGDLM
FYDQGDDQHLMIWMGRSIAYHTGSSTPTDNGMRSVSLQQLMTWKDTRWIPDESNPNFIGIYRLAFLSQ*
AnnotationID:3618GeneID:3610
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 05:05:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4490
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81225.1|AE016763_184 (AE016763) Hypothetical protein yfaT precursor [Escherichia coli
           CFT073]
          Length = 216

 Score =  320 bits (820), Expect = 4e-87
 Identities = 143/186 (76%), Positives = 170/186 (91%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14891




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24365




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31533




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3610_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3610
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5781
                           PA4490_tr
                           translation of PA4490
                           212
                           99.05
                           99.05
                           0
                           1114.0
     

     
     
161289
                           gb|AAG07878.1|AE004862_12
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           212
                           98.58
                           99.05
                           0
                           1111.0
     

     
     
161291
                           gb|AAP17643.1|
                           (AE016985) hypothetical protein S2442 [Shigella flexneri 2a str. 2457T]
                           214
                           68.69
                           83.17
                           9
                           811.0
     

     
     
161290
                           gb|AAN81225.1|AE016763_184
                           (AE016763) Hypothetical protein yfaT precursor [Escherichia coli CFT073]
                           219
                           68.49
                           82.19
                           10
                           819.0
     

     
     
161292
                           gb|AAN43826.1|AE015246_7
                           (AE015246) orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
                           219
                           68.03
                           82.19
                           10
                           810.0
     

     






      

          
GC ORFID: 46612How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4490Glimmer Score: 

          
Start: 4452877Stop: 4452239

          
Length: 639


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4490 translation of PA4490Homolog Bit Score 433.0

          
Other Homologs:  t_PA4490 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGACGCCTGACTGCCTTCGGCCTGGCGCTGCTCCTGCTGGCCAGCGGCGTTGCCCGCGGCGAGCCCCCG 
GTAGCGCTCGACCCGCAGCAATCGCAGGTATTCCGCGCCTGGTTCGTGCGCATCGCCCAGGAACAGTTGCGC 
CAAGGGCCGAGTCCGCGCTGGCACCAGCAGGACTGCGCCGGCCTGGTGCGCTTCGCCGCCAACGAGGCGCTG 
AAAGTCCACGATGGCAAGTGGCTGCGCGCCAACGGCCTGTCCAACCGCTACCTGCCCCCGGAGCTGGCGCTC 
AGTCCCGAGCAACGGCGCCTGGCGCAGAACTGGCAGCAGGGTGGCGGCCAGGTCGGGCCCTACGTGAATGCG 
ATCAAGCTGGTGCAGTTCAACAGTCGGCTGGTCGGCCGCGACCTCAACCAGGCGCGCCCCGGCGACCTGATG 
TTCTACGACCAGGGCGACGACCAGCACCTGATGATCTGGATGGGCCGCTCCATCGCCTATCACACCGGCAGC 
AGCACCCCGACCGATAACGGCATGCGCTCGGTCAGCCTGCAACAACTCATGACATGGAAGGACACCCGATGG 
ATCCCCGACGAATCCAATCCCAACTTTATCGGCATCTATCGGCTGGCTTTCCTCTCTCAATGA