ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3609

TrivialName: PA14_28990

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_28990

PAO1 Ortholog Locus: PA2720

Sequence Length: 639

Protein Length: 212

Start: 2506753

Stop: 2507391

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06108.1|AE004700_4 (AE004700) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 210/212 (99%), Positives = 210/212 (99%)

Sequence:

ATGGAAGCGGTCTCCGTCTCGCAGCATCTGGCTGCTCTGTTCGAATCCCACCGGATCGACTGCGTCGTGCAC
GGCGAATGGGTGGCGCCAGCCGGGCGGCTACCGGCGATCCGCGCCACCTGGTATGCGGGGGAGAAGACCGGG
CGGCTGGATGTCGACGTGCTGCTGGAGGACGAGCGCCAGTTGCAGGAAGCCTTCGCCGGCATCGGCAGCGGC
GAGGACGGCTTGCAGGACGCGTTGCGTAACTTCGCCTCCAACTCTTTCCACGTGCTGCTTTCCGCGCTCTGG
GGCCAGGCCGAGGAGGACCAGGTGATGGTGGAGACCTGGGAGATCGGCGAGCGGCGTTTCGAGGTGCATATC
GGCAACCTCGGCCTGCGCGGCGCCGAAGGCAAGGCGCCGCCGCTGCCGGCCGGGCTGTTCCCGAGCATCGAG
CGAGCGATCCGCACCGAGCCGCTGGACGCGCGCCTGCACTGGTTCCGGCATTTCTTCTGTGCCTTCGGCAAC
CAGCGCACGGTGGAGGCGCTGTTCGACAACCAGCCGTGGGAGGCCGGCATGCAGAACCTGGCTGCTCTCGAC
TGGCAGGATTCGCAGGGTTACTACAGCGTGCGCAACTTCCTCATGCTCAAGCCGCTGGCGTAG

Translation:

MEAVSVSQHLAALFESHRIDCVVHGEWVAPAGRLPAIRATWYAGEKTGRLDVDVLLEDERQLQEAFAGIGSG
EDGLQDALRNFASNSFHVLLSALWGQAEEDQVMVETWEIGERRFEVHIGNLGLRGAEGKAPPLPAGLFPSIE
RAIRTEPLDARLHWFRHFFCAFGNQRTVEALFDNQPWEAGMQNLAALDWQDSQGYYSVRNFLMLKPLA*

AnnotationID:3617 GeneID:3609

AnnotatorUID: diggins

Modification Date/Time: 2005-04-05 07:07:19

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA2720

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:7221

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24363

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3609

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5780 PA2720_tr translation of PA2720 212 99.05 99.05 0 1114.0

161288 gb|AAG06108.1|AE004700_4 (AE004700) hypothetical protein PA2720 [Pseudomonas aeruginosa PAO1] 212 99.05 99.05 0 1114.0

GC ORFID: `46611`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2720`	Glimmer Score:
Start: `2447173`	Stop: `2446535`
Length: `639`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA2720 translation of PA2720`	Homolog Bit Score `433.0`
Other Homologs: `t_PA2720 (ORF: GLIMMER)`
GC ORF Sequence
ATGGAAGCGGTCTCCGTCTCGCAGCATCTGGCTGCTCTGTTCGAATCCCACCGGATCGACTGCGTCGTGCAC GGCGAATGGGTGGCGCCAGCCGGGCGGCTACCGGCGATCCGCGCCACCTGGTATGCGGGGGAGAAGACCGGG CGGCTGGATGTCGACGTGCTGCTGGAGGACGAGCGCCAGTTGCAGGAAGCCTTCGCCGGCATCGGCAGCGGC GAGGACGGCTTGCAGGACGCGTTGCGTAACTTCGCCTCCAACTCTTTCCACGTGCTGCTTTCCGCGCTCTGG GGCCAGGCCGAGGAGGACCAGGTGATGGTGGAGACCTGGGAGATCGGCGAGCGGCGTTTCGAGGTGCATATC GGCAACCTCGGCCTGCGCGGCGCCGAAGGCAAGGCGCCGCCGCTGCCGGCCGGGCTGTTCCCGAGCATCGAG CGAGCGATCCGCACCGAGCCGCTGGACGCGCGCCTGCACTGGTTCCGGCATTTCTTCTGTGCCTTCGGCAAC CAGCGCACGGTGGAGGCGCTGTTCGACAACCAGCCGTGGGAGGCCGGCATGCAGAACCTGGCTGCTCTCGAC TGGCAGGATTCGCAGGGTTACTACAGCGTGCGCAACTTCCTCATGCTCAAGCCGCTGGCGTAG