ViewGene

Locus Name:
GeneID:
Location:

GeneID:3608
TrivialName: PA14_36230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36230
PAO1 Ortholog Locus:PA2202
Sequence Length:678
Protein Length:225
Start: 3226905
Stop: 3227582
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05590.1|AE004646_11 (AE004646) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 224/225 (99%), Positives = 224/225 (99%)
Sequence:
ATGGATTTCTCGGTCATCTCGGACAACCTGTCCTACCTGCTGCTCGGCGCCTACCCGGACGGCCCGCTTGGC
GGAGCGGCGCTGACCCTGCTGCTGGCGTCGCTCTCCGGACTGGCTTCGGCGGTGCTCGGCCTGGTCCTCGGC
GTGGCCCTCGCGGTGCTGCCCGGCAAGCCGCGCCTGCTGCTGGTGACGTTGCTCGGCTTCTTCCGTGCGATC
CCGGTGCTGATGCTGATCTTCTGGACCTACTTCCTGCTGCCGATCGTCTTCCATGTCGACGTACCGGCGCTG
GCCACCGTGGTCTGCGCGCTGTCGCTGATCGGCGGCGCCTACCTCGCCCACTCGGTGTACGCCGGCATCCAC
AGCCTCCCCGCCGGACAGTGGGCGGCCGCCCGCGCGCTCGGACTGCGGCCGTGGCAGGTGTTGCGCCTGGTG
ATCCTGCCGCAGGCGCTGCCGGTGATGCTGCCGTCCTTCCTCAACCAGTGGGTGTCGCTGATCAAGGACACT
TCCCTGGCCTACGTGATCGGCGTCGGCGAACTGTCCTTCGTCGCCACCCAGGTGAGCAACCGGGTGATGGTC
CACCCGACGGAGATCTTCCTGTTCGTCGCCCTGCTCTACTTCCTGCTCTGCACCAGCCTCGACCTGGCCGCC
GCTTTCCTCGCCCGCCGCCGGCGGGCCTGA
Translation:
MDFSVISDNLSYLLLGAYPDGPLGGAALTLLLASLSGLASAVLGLVLGVALAVLPGKPRLLLVTLLGFFRAI
PVLMLIFWTYFLLPIVFHVDVPALATVVCALSLIGGAYLAHSVYAGIHSLPAGQWAAARALGLRPWQVLRLV
ILPQALPVMLPSFLNQWVSLIKDTSLAYVIGVGELSFVATQVSNRVMVHPTEIFLFVALLYFLLCTSLDLAA
AFLARRRRA*
AnnotationID:3616GeneID:3608
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 14:02:34
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid transport system permease
Cell Localization:()
Synonyms:glnP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:glutamine transport system permease protein
Functional Category Confidence Code:5
COGs:COG0765,COG4215
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC93558.1| (AJ414160) putative amino acid transport system permease [Yersinia
           pestis CO92]
          Length = 251

 Score =  293 bits (751), Expect = 4e-79
 Identities = 144/222 (64%), Positives = 181/222 (81%)

>gb|AAO56407.1| (AE016866) glutamine ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 246

 Score =  174 bits (440), Expect = 5e-43
 Identities = 90/220 (40%), Positives = 140/220 (63%)

Structural Features:
COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  97.7% aligned
Score =  164 bits (418), Expect = 6e-42
Identities = 97/218 (44%), Positives = 124/218 (56%), Gaps = 1/218 (0%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  96.5% aligned
Score =  103 bits (259), Expect = 1e-23
Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 14/223 (6%)
Genomic Context:
Comment:
ReferenceID:7219
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24361
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32552
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3608_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3608

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5778 PA2202_tr translation of PA2202 225 99.55 99.55 0 1114.0
161271 gb|AAG05590.1|AE004646_11 (AE004646) probable amino acid permease [Pseudomonas aeruginosa PAO1] 225 99.55 99.55 0 1114.0
161272 emb|CAC93558.1| (AJ414160) putative amino acid transport system permease [Yersinia pestis CO92] 251 57.37 72.11 26 746.0
161274 emb|CAE12516.1| (BX571859) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 247 57.08 73.68 22 733.0
161275 gb|AAQ58948.1| (AE016914) glutamine transport system permease protein [Chromobacterium violaceum ATCC 12472] 227 53.30 66.96 2 580.0
GC ORFID: 46610How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2202Glimmer Score:
Start: 1727011Stop: 1726334
Length: 678
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2202 translation of PA2202Homolog Bit Score 433.0
Other Homologs: t_PA4193 (ORF: BLASTX 185.0), t_PA2202 (ORF: GLIMMER)
GC ORF Sequence
ATGGATTTCTCGGTCATCTCGGACAACCTGTCCTACCTGCTGCTCGGCGCCTACCCGGACGGCCCGCTTGGC
GGAGCGGCGCTGACCCTGCTGCTGGCGTCGCTCTCCGGACTGGCTTCGGCGGTGCTCGGCCTGGTCCTCGGC
GTGGCCCTCGCGGTGCTGCCCGGCAAGCCGCGCCTGCTGCTGGTGACGTTGCTCGGCTTCTTCCGTGCGATC
CCGGTGCTGATGCTGATCTTCTGGACCTACTTCCTGCTGCCGATCGTCTTCCATGTCGACGTACCGGCGCTG
GCCACCGTGGTCTGCGCGCTGTCGCTGATCGGCGGCGCCTACCTCGCCCACTCGGTGTACGCCGGCATCCAC
AGCCTCCCCGCCGGACAGTGGGCGGCCGCCCGCGCGCTCGGACTGCGGCCGTGGCAGGTGTTGCGCCTGGTG
ATCCTGCCGCAGGCGCTGCCGGTGATGCTGCCGTCCTTCCTCAACCAGTGGGTGTCGCTGATCAAGGACACT
TCCCTGGCCTACGTGATCGGCGTCGGCGAACTGTCCTTCGTCGCCACCCAGGTGAGCAACCGGGTGATGGTC
CACCCGACGGAGATCTTCCTGTTCGTCGCCCTGCTCTACTTCCTGCTCTGCACCAGCCTCGACCTGGCCGCC
GCTTTCCTCGCCCGCCGCCGGCGGGCCTGA