ViewGene
Locus Name:
GeneID:
Location:

GeneID:3607
TrivialName: PA14_03010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03010
PAO1 Ortholog Locus:PA0243
Sequence Length:669
Protein Length:222
Start: 265574
Stop: 266242
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03632.1|AE004462_5 (AE004462) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 222/222 (100%), Positives = 222/222 (100%)
Sequence:
ATGTCCAAGCCTGATCCCGCCGTCGTGGAGGAATCCGCTCCGCGCGGCAAGGGACGCAAGAACAATCCCGAG
AAGACCCGCCAGGACATCCTCCGCGCCGCCATCGACGAGTTCGTCGCCCAGGGCCTCTCGGGTGCGCGGGTC
GACGCCATCGCCGAGCGCACGCATACCTCGAAGCGGATGATCTATTACTACTTCGGCAGCAAGGAGCAGCTT
TACCAGGCCGTGCTGGAGAAGCTCTACAGCGACATCCGCGGTATCGAGGGCACCCTGCGGCTGGGCGCGCTG
CCGCCGGCCAAGGCGATGGAGAAGCTGGTGGAGTTCAGCTTCGACTACCACGACCGGCACGTGGATTTCGTG
CGCATCATCAGCATCGAGAACATCCACAAGGGCGAGCACATCGCCAGCAGCGAACTGGTGCAGAGCGTCAAC
AGCTCGATCGTCCAGAGCATCGCCGAGATTCTCCGCCGCGGCGAAGCGGAAGGGGTGTTCCGCGCCGGGCTG
GAGGCGCTCGACGTGCACATGCTGATCAGTTCGTTCTGCTTCTACCGGGTGTCCAATCGCTACACCGTGTCG
CGGATCTTTCGCACCGACCTGCACGACGCCGAGGTTCGCCAGCGGCACCGGCGGATGATTGGCGAGGCGGTA
TTGCGCTACATCCGTGCCTGA
Translation:
MSKPDPAVVEESAPRGKGRKNNPEKTRQDILRAAIDEFVAQGLSGARVDAIAERTHTSKRMIYYYFGSKEQL
YQAVLEKLYSDIRGIEGTLRLGALPPAKAMEKLVEFSFDYHDRHVDFVRIISIENIHKGEHIASSELVQSVN
SSIVQSIAEILRRGEAEGVFRAGLEALDVHMLISSFCFYRVSNRYTVSRIFRTDLHDAEVRQRHRRMIGEAV
LRYIRA*
AnnotationID:3615GeneID:3607
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:59
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA0243
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309,pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55859.1| (AE016864) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 223

 Score =  276 bits (706), Expect = 6e-74
 Identities = 137/222 (61%), Positives = 176/222 (79%), Gaps = 1/222 (0%)

>gb|AAN69128.1|AE016546_9 (AE016787) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 227

 Score =  265 bits (676), Expect = 2e-70
 Identities = 130/205 (63%), Positives = 165/205 (80%)








 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  98.5% aligned
Score = 63.9 bits (153), Expect = 2e-11
Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 1/198 (0%)

pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 54.2 bits (131), Expect = 1e-08
Identities = 18/47 (38%), Positives = 26/47 (55%)









   
Genomic Context:






   
Comment:


















    ReferenceID:7217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24359




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33597




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3607_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3607
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5777
                           PA0243_tr
                           translation of PA0243
                           222
                           99.99
                           99.99
                           0
                           1117.0
     

     
     
161260
                           gb|AAG03632.1|AE004462_5
                           (AE004462) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           222
                           99.99
                           99.99
                           0
                           1117.0
     

     
     
161261
                           gb|AAO55859.1|
                           (AE016864) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           223
                           61.43
                           78.92
                           1
                           707.0
     

     
     
161262
                           gb|AAN69128.1|AE016546_9
                           (AE016787) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           230
                           57.82
                           73.91
                           11
                           672.0
     

     
     
161264
                           emb|CAD18546.1|
                           (AL646084) PUTATIVE TRANSCRIPTION REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           228
                           49.12
                           67.98
                           10
                           582.0
     

     






      

          
GC ORFID: 46609How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0243Glimmer Score: 

          
Start: 6066915Stop: 6067583

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0243 translation of PA0243Homolog Bit Score 434.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1102 (ORF: BLASTX 270.0), t_PA0243 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAAGCCTGATCCCGCCGTCGTGGAGGAATCCGCTCCGCGCGGCAAGGGACGCAAGAACAATCCCGAG 
AAGACCCGCCAGGACATCCTCCGCGCCGCCATCGACGAGTTCGTCGCCCAGGGCCTCTCGGGTGCGCGGGTC 
GACGCCATCGCCGAGCGCACGCATACCTCGAAGCGGATGATCTATTACTACTTCGGCAGCAAGGAGCAGCTT 
TACCAGGCCGTGCTGGAGAAGCTCTACAGCGACATCCGCGGTATCGAGGGCACCCTGCGGCTGGGCGCGCTG 
CCGCCGGCCAAGGCGATGGAGAAGCTGGTGGAGTTCAGCTTCGACTACCACGACCGGCACGTGGATTTCGTG 
CGCATCATCAGCATCGAGAACATCCACAAGGGCGAGCACATCGCCAGCAGCGAACTGGTGCAGAGCGTCAAC 
AGCTCGATCGTCCAGAGCATCGCCGAGATTCTCCGCCGCGGCGAAGCGGAAGGGGTGTTCCGCGCCGGGCTG 
GAGGCGCTCGACGTGCACATGCTGATCAGTTCGTTCTGCTTCTACCGGGTGTCCAATCGCTACACCGTGTCG 
CGGATCTTTCGCACCGACCTGCACGACGCCGAGGTTCGCCAGCGGCACCGGCGGATGATTGGCGAGGCGGTA 
TTGCGCTACATCCGTGCCTGA