ViewGene
Locus Name:
GeneID:
Location:

GeneID:3606
TrivialName: PA14_69260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69260
PAO1 Ortholog Locus:PA5245
Sequence Length:669
Protein Length:222
Start: 6178839
Stop: 6179507
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08630.1|AE004937_2 (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 222/222 (100%), Positives = 222/222 (100%)
Sequence:
ATGCACAAGAAAGTTGCCGTCATCCTCTCCGGTTGTGGCGTCTACGATGGCGCGGAAATCCACGAAAGCGTG
ATCACCCTGCTCCGCCTCAGCCAGCGCGGCGCCGAGGCACAATGCTTCGCGCCGAACATCGCCCAGCACCAT
GTGGTCAACCACCTGACCGGCGAGGAAATGCCGGAAAGCCGCAATGTCCTGGTCGAGTCCGCGCGTATCGCC
CGCGGCGAAGTCAAGGACCTGCGCGAAGCCCGCGCCGAGGACTACGACGCGCTGATCGTGCCCGGTGGCTTC
GGCGCTGCGAAGAACCTCAGCGACTTTGCCATCAACGGCGCGCAATGCCAGGTGCAGCCGGACGTGCTGGCG
CTGGCCAAGGCTTTCGCCGAAGCCGGCAAGCCAGTCGGGCTGATCTGCATCGCTCCGGCGATGGCGGCGAAG
ATCTACGGCGCCGGCGTCCAATGCACCATCGGCAACGACGCCGACACCGCCGACGCGCTGAAGCAGATGGGT
GCCGAGCACATCGACGCGCCGGTGGACGAGATCGTCGAAGACAGCGCGCGCAAGCTGGTGACCACCCCGGCC
TACATGCTCGCCCAGTCGATCGCCGAAGCCGCTTCCGGGATCAACAAGCTGGTCGACCGGGTGCTCGAACTG
GTGGACCAGGACAAGGCCTGA
Translation:
MHKKVAVILSGCGVYDGAEIHESVITLLRLSQRGAEAQCFAPNIAQHHVVNHLTGEEMPESRNVLVESARIA
RGEVKDLREARAEDYDALIVPGGFGAAKNLSDFAINGAQCQVQPDVLALAKAFAEAGKPVGLICIAPAMAAK
IYGAGVQCTIGNDADTADALKQMGAEHIDAPVDEIVEDSARKLVTTPAYMLAQSIAEAASGINKLVDRVLEL
VDQDKA*
AnnotationID:3614GeneID:3606
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative enhancing lycopene biosynthesis protein 2
Cell Localization:()
Synonyms:elbB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative isoprenoid biosynthesis protein
Functional Category Confidence Code:5
COGs:COG3155
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58679.1| (AE016875) enhancing lycopene biosynthesis protein 2 [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 222

 Score =  342 bits (876), Expect = 1e-93
 Identities = 169/222 (76%), Positives = 192/222 (86%)

>gb|AAN70785.1|AE016722_6 (AE016793) enhancing lycopene biosynthesis protein 2 [Pseudomonas
           putida KT2440]
          Length = 221

 Score =  340 bits (872), Expect = 4e-93
 Identities = 172/219 (78%), Positives = 193/219 (88%)

>gb|AAL22196.1| (AE008853) sigma cross-reacting protein 27A (SCRP-27A) [Salmonella
           typhimurium LT2]
          Length = 217

 Score =  278 bits (712), Expect = 1e-74
 Identities = 135/216 (62%), Positives = 174/216 (80%)






 
Structural Features:
COG3155, ElbB, Uncharacterized protein involved in an early 
stage of isoprenoid biosynthesis 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 217 residues, 100.0% aligned
Score =  356 bits (916), Expect = 9e-100
Identities = 152/217 (70%), Positives = 181/217 (83%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7215




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24357




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34837




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3606_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3606
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5776
                           PA5245_tr
                           translation of PA5245
                           222
                           99.99
                           99.99
                           0
                           1116.0
     

     
     
161236
                           gb|AAG08630.1|AE004937_2
                           (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           222
                           99.99
                           99.99
                           0
                           1116.0
     

     
     
161238
                           gb|AAN70785.1|AE016722_6
                           (AE016793) enhancing lycopene biosynthesis protein 2 [Pseudomonas putida KT2440]
                           224
                           76.78
                           86.16
                           5
                           872.0
     

     
     
161237
                           gb|AAO58679.1|
                           (AE016875) enhancing lycopene biosynthesis protein 2 [Pseudomonas syringae pv. tomato str. DC3000]
                           222
                           76.12
                           86.48
                           0
                           876.0
     

     
     
161243
                           gb|AAP18528.1|
                           (AE016989) sigma cross-reacting protein 27A (SCRP-27A) [Shigella flexneri 2a str. 2457T]
                           222
                           61.26
                           77.92
                           5
                           698.0
     

     






      

          
GC ORFID: 46608How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5245Glimmer Score: 

          
Start: 5442526Stop: 5443194

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5245 translation of PA5245Homolog Bit Score 434.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3878 (ORF: BLASTX 347.0), t_PA5245 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAAGAAAGTTGCCGTCATCCTCTCCGGTTGTGGCGTCTACGATGGCGCGGAAATCCACGAAAGCGTG 
ATCACCCTGCTCCGCCTCAGCCAGCGCGGCGCCGAGGCACAATGCTTCGCGCCGAACATCGCCCAGCACCAT 
GTGGTCAACCACCTGACCGGCGAGGAAATGCCGGAAAGCCGCAATGTCCTGGTCGAGTCCGCGCGTATCGCC 
CGCGGCGAAGTCAAGGACCTGCGCGAAGCCCGCGCCGAGGACTACGACGCGCTGATCGTGCCCGGTGGCTTC 
GGCGCTGCGAAGAACCTCAGCGACTTTGCCATCAACGGCGCGCAATGCCAGGTGCAGCCGGACGTGCTGGCG 
CTGGCCAAGGCTTTCGCCGAAGCCGGCAAGCCAGTCGGGCTGATCTGCATCGCTCCGGCGATGGCGGCGAAG 
ATCTACGGCGCCGGCGTCCAATGCACCATCGGCAACGACGCCGACACCGCCGACGCGCTGAAGCAGATGGGT 
GCCGAGCACATCGACGCGCCGGTGGACGAGATCGTCGAAGACAGCGCGCGCAAGCTGGTGACCACCCCGGCC 
TACATGCTCGCCCAGTCGATCGCCGAAGCCGCTTCCGGGATCAACAAGCTGGTCGACCGGGTGCTCGAACTG 
GTGGACCAGGACAAGGCCTGA