ViewGene
Locus Name:
GeneID:
Location:

GeneID:3603
TrivialName: PA14_46930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46930
PAO1 Ortholog Locus:PA1340
Sequence Length:669
Protein Length:222
Start: 4179778
Stop: 4180446
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04729.1|AE004563_6 (AE004563) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 222/222 (100%), Positives = 222/222 (100%)
Sequence:
ATGATGGACTTCAGTGGAATCGTTCCCGCCCTGCCGAGCCTCTGGGAAGGCATGCTGATGACCCTCAAGCTG
ATGGTCCTCGGCGTCCTCGGCGGCGTCGCGCTGGGTACCGTGCTGGCGCTGATGCGGTTGTCGCACAGCAAG
TTGCTGTCGAACATCGCCGGCTTCTACGTCAACTACTTCCGCTCGATCCCGCTGCTGCTGGTGATCACCTGG
TTCTACTTCGCGGTGCCCTTCATCCTGCGCTGGATCACCGGCGAGGACACCCCGGTGGGGGCGTTCACCTCC
TGCCTGGTGGCCTTCATGATGTTCGAGGCGGCCTACTACTGCGAGATCGTCCGCGCCGGCATCCAGGCCATC
CCGAAAGGCCAGATGGGCGCCGCCCAGGCACTGGGCATGACCTACGGGCAGACCATGCGCCTGGTGATCCTG
CCGCAGGCGTTCCGCAAGATGACCCCGCTGCTGCTGCAACAGAGCATCATCCTGTTCCAGGACACCTCGCTG
GTCTATACCGTCGGCCTGATGGACTTCCTCAATTCGGCCCGTTCGCGCGGCGACATCATCGGCCAGGCCAAC
GAGTTCCTGATTTTCGCCGGCCTGGTCTACTTCGTCGTAAGCTTCACCGCCTCGTTCGCCGTCAAACGTCTG
CAGAAAAGGTTAACCGTATGA
Translation:
MMDFSGIVPALPSLWEGMLMTLKLMVLGVLGGVALGTVLALMRLSHSKLLSNIAGFYVNYFRSIPLLLVITW
FYFAVPFILRWITGEDTPVGAFTSCLVAFMMFEAAYYCEIVRAGIQAIPKGQMGAAQALGMTYGQTMRLVIL
PQAFRKMTPLLLQQSIILFQDTSLVYTVGLMDFLNSARSRGDIIGQANEFLIFAGLVYFVVSFTASFAVKRL
QKRLTV*
AnnotationID:3611GeneID:3603
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:40
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:gltK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative glutamate/aspartate transport system permease
Functional Category Confidence Code:5
COGs:COG0765,COG4160,COG4215
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66694.1|AE016297_8 (AE016778) amino acid ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 223

 Score =  382 bits (981), Expect = e-106
 Identities = 186/221 (84%), Positives = 211/221 (95%)

>gb|AAO57629.1| (AE016871) amino acid ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 221

 Score =  369 bits (947), Expect = e-102
 Identities = 180/221 (81%), Positives = 201/221 (90%)

>gb|AAB40854.1| (U82598) glutamate/aspartate transport system permease protein
           [Escherichia coli]
          Length = 224

 Score =  214 bits (544), Expect = 4e-55
 Identities = 115/218 (52%), Positives = 152/218 (69%), Gaps = 1/218 (0%)






 
Structural Features:
COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  97.3% aligned
Score =  188 bits (479), Expect = 5e-49
Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  98.2% aligned
Score =  115 bits (290), Expect = 3e-27
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  94.8% aligned
Score =  122 bits (309), Expect = 3e-29
Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 7/218 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7209




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24351




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37452




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3603_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3603
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5773
                           PA1340_tr
                           translation of PA1340
                           222
                           99.99
                           99.99
                           0
                           1116.0
     

     
     
161160
                           gb|AAG04729.1|AE004563_6
                           (AE004563) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           222
                           99.99
                           99.99
                           0
                           1116.0
     

     
     
161161
                           gb|AAN66694.1|AE016297_8
                           (AE016778) amino acid ABC transporter, permease protein [Pseudomonas putida KT2440]
                           223
                           83.40
                           94.61
                           1
                           979.0
     

     
     
161162
                           gb|AAO57629.1|
                           (AE016871) amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           222
                           81.08
                           90.54
                           1
                           947.0
     

     
     
161163
                           gb|AAQ57797.1|
                           (AE016910) glutamate/aspartate transport system permease protein [Chromobacterium violaceum ATCC 12472]
                           222
                           73.87
                           83.78
                           0
                           816.0
     

     






      

          
GC ORFID: 46605How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1340Glimmer Score: 

          
Start: 774131Stop: 773463

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1340 translation of PA1340Homolog Bit Score 434.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6132 (ORF: BLASTX 368.0), t_PA1340 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGGACTTCAGTGGAATCGTTCCCGCCCTGCCGAGCCTCTGGGAAGGCATGCTGATGACCCTCAAGCTG 
ATGGTCCTCGGCGTCCTCGGCGGCGTCGCGCTGGGTACCGTGCTGGCGCTGATGCGGTTGTCGCACAGCAAG 
TTGCTGTCGAACATCGCCGGCTTCTACGTCAACTACTTCCGCTCGATCCCGCTGCTGCTGGTGATCACCTGG 
TTCTACTTCGCGGTGCCCTTCATCCTGCGCTGGATCACCGGCGAGGACACCCCGGTGGGGGCGTTCACCTCC 
TGCCTGGTGGCCTTCATGATGTTCGAGGCGGCCTACTACTGCGAGATCGTCCGCGCCGGCATCCAGGCCATC 
CCGAAAGGCCAGATGGGCGCCGCCCAGGCACTGGGCATGACCTACGGGCAGACCATGCGCCTGGTGATCCTG 
CCGCAGGCGTTCCGCAAGATGACCCCGCTGCTGCTGCAACAGAGCATCATCCTGTTCCAGGACACCTCGCTG 
GTCTATACCGTCGGCCTGATGGACTTCCTCAATTCGGCCCGTTCGCGCGGCGACATCATCGGCCAGGCCAAC 
GAGTTCCTGATTTTCGCCGGCCTGGTCTACTTCGTCGTAAGCTTCACCGCCTCGTTCGCCGTCAAACGTCTG 
CAGAAAAGGTTAACCGTATGA