ViewGene
Locus Name:
GeneID:
Location:

GeneID:3602
TrivialName: PA14_12020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12020
PAO1 Ortholog Locus:PA4006
Sequence Length:645
Protein Length:214
Start: 1039403
Stop: 1040047
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07393.1|AE004817_17 (AE004817) nicotinic acid mononucleotide adenylyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 214/214 (100%), Positives = 214/214 (100%)
Sequence:
ATGGGCAAACGTATCGGCCTGTTCGGCGGCACTTTCGACCCCGTGCATATCGGACATATGCGCAGCGCCGTG
GAAATGGCCGAGCAGTTCGCCCTCGACGAACTGCGCCTGCTGCCCAATGCGCGGCCGCCGCACCGGGAAACC
CCGCAGGTGTCGGCCGCGCAGCGGTTGGCGATGGTCGAGCGGGCGGTGGCGGGAGTCGAGCGATTGACGGTC
GATCCCCGCGAACTGCAGCGCGACAAGCCGTCCTACACCATCGACACCCTGGAGTCGGTGCGGGCGGAACTG
GCGGCCGACGACCAGTTGTTCATGCTGATCGGCTGGGATGCCTTCTGCGGCTTGCCGACGTGGCACCGCTGG
GAGGCGTTGCTGGATCACTGCCACATCGTCGTGTTGCAGCGTCCGGATGCCGACAGCGAGCCGCCGGAGTCG
CTGCGCGACCTGCTGGCGGCGCGGAGCGTGGCCGACCCGCAGGCCCTGAAAGGGCCGGGCGGGCAGATCACC
TTCGTCTGGCAGACGCCGCTGGCGGTGTCCGCCACCCAGATCCGTGCGCTGCTGGGTGCCGGGCGCTCCGTG
CGTTTCCTGGTGCCGGACGCGGTATTGAACTACATCGAGGCGCACCACCTGTATCGTGCGCCACACTGA
Translation:
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTV
DPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPES
LRDLLAARSVADPQALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH*
AnnotationID:3610GeneID:3602
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:41
Gene Name:nadD
Confidence Code:2
GeneProduct:NadD nicotinic acid mononucleotide adenylyltransferase
Cell Localization:()
Synonyms:ybeN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1057,pfam01467
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07393.1|AE004817_17 (AE004817) nicotinic acid mononucleotide adenylyltransferase
[Pseudomonas aeruginosa PAO1]
Length = 214
Score =  435 bits (1118), Expect = e-121
Identities = 214/214 (100%), Positives = 214/214 (100%)






 
Structural Features:
gnl|CDD|10782 COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase
[Coenzyme metabolism]
Length = 197
Score =  208 bits (531), Expect = 8e-55
Identities = 84/212 (39%), Positives = 113/212 (53%), Gaps = 17/212 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7207




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24349




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3602
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5772
                           PA4006_tr
                           translation of PA4006
                           214
                           99.99
                           99.99
                           0
                           1118.0
     

     
     
161150
                           gb|AAG07393.1|AE004817_17
                           (AE004817) nicotinic acid mononucleotide adenylyltransferase [Pseudomonas aeruginosa PAO1]
                           214
                           99.99
                           99.99
                           0
                           1118.0
     

     
     
161151
                           gb|AAO58257.1|
                           (AE016873) nicotinate (nicotinamide) nucleotide adenylyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           222
                           72.97
                           85.13
                           8
                           877.0
     

     
     
161152
                           gb|AAN70379.1|AE016679_11
                           (AE016792) conserved hypothetical protein TIGR00482 [Pseudomonas putida KT2440]
                           230
                           70.00
                           80.00
                           16
                           867.0
     

     
     
161154
                           emb|CAC92850.1|
                           (AJ414153) putative nicotinate-nucleotide adenylyltransferase [Yersinia pestis CO92]
                           224
                           45.98
                           57.58
                           14
                           453.0
     

     






      

          
GC ORFID: 46604How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4006Glimmer Score: 

          
Start: 3914535Stop: 3913891

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4006 translation of PA4006Homolog Bit Score 435.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5323 (ORF: BLASTX 341.0), t_PA4006 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCAAACGTATCGGCCTGTTCGGCGGCACTTTCGACCCCGTGCATATCGGACATATGCGCAGCGCCGTG 
GAAATGGCCGAGCAGTTCGCCCTCGACGAACTGCGCCTGCTGCCCAATGCGCGGCCGCCGCACCGGGAAACC 
CCGCAGGTGTCGGCCGCGCAGCGGTTGGCGATGGTCGAGCGGGCGGTGGCGGGAGTCGAGCGATTGACGGTC 
GATCCCCGCGAACTGCAGCGCGACAAGCCGTCCTACACCATCGACACCCTGGAGTCGGTGCGGGCGGAACTG 
GCGGCCGACGACCAGTTGTTCATGCTGATCGGCTGGGATGCCTTCTGCGGCTTGCCGACGTGGCACCGCTGG 
GAGGCGTTGCTGGATCACTGCCACATCGTCGTGTTGCAGCGTCCGGATGCCGACAGCGAGCCGCCGGAGTCG 
CTGCGCGACCTGCTGGCGGCGCGGAGCGTGGCCGACCCGCAGGCCCTGAAAGGGCCGGGCGGGCAGATCACC 
TTCGTCTGGCAGACGCCGCTGGCGGTGTCCGCCACCCAGATCCGTGCGCTGCTGGGTGCCGGGCGCTCCGTG 
CGTTTCCTGGTGCCGGACGCGGTATTGAACTACATCGAGGCGCACCACCTGTATCGTGCGCCACACTGA