ViewGene

Locus Name:
GeneID:
Location:

GeneID:3601
TrivialName: PA14_25330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25330
PAO1 Ortholog Locus:PA2996
Sequence Length:675
Protein Length:224
Start: 2215172
Stop: 2215846
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06384.1|AE004724_13 (AE004724) Na+-translocating NADH:uniquinone oxidoreductase subunit Nqr4 [Pseudomonas aeruginosa PAO1]
Identities = 224/224 (100%), Positives = 224/224 (100%)
Sequence:
GTGATGGCTGCTCAACCCACGATCCGCGAAGTCCTGTTCAATCCGGTCTTCCAGAACAATCCGATCGGCCTG
CAGATCCTCGGGATCTGCTCGGCGCTGGCGGTAACCTCGAACCTGAAGACCGCTACCGTCATGGCCATCGCC
CTGACCCTGGTGACCGGCTTCTCCAACCTGTTCATCTCGATGATCCGCCGGCAGATTCCCAGCTCGATCCGG
ATGATCGTGCAGATGGTGATCATCGCCTCGCTGGTGATCGTCGTCGACCAGGTGCTCAAGGCCTATGCCTAT
AGCCTGAGCAAGCAGCTCTCGGTGTTCGTCGGGCTGATCATCACCAACTGCATCGTGATGGGCCGCGCCGAA
GCCTTCGCCATGGCCAACCCGCCGCTCGTGTCGTTCTTCGACGGCATCGGCAACGGTCTCGGCTACAGCGCC
ATGCTGCTGGTGCTGGGCTTCGTCCGCGAGCTGTTCGGCGCCGGCAAGCTTTACGGCATCAGCGTGTTGCCG
ACGGTCAACGATGGCGGCTGGTACCAGCCGAACGGCCTGCTCCTGCTGCCGCCTTCGGCGTTCTTCCTGATC
GGCCTGATCATCTGGGCCCTGCGGACCTGGAAGAAAGACCAGGTCGAGGCCCCGACCTACAAGATGGCCCCG
CAGGTATCCAGCAAGGAGGCTTACTGA
Translation:
MMAAQPTIREVLFNPVFQNNPIGLQILGICSALAVTSNLKTATVMAIALTLVTGFSNLFISMIRRQIPSSIR
MIVQMVIIASLVIVVDQVLKAYAYSLSKQLSVFVGLIITNCIVMGRAEAFAMANPPLVSFFDGIGNGLGYSA
MLLVLGFVRELFGAGKLYGISVLPTVNDGGWYQPNGLLLLPPSAFFLIGLIIWALRTWKKDQVEAPTYKMAP
QVSSKEAY*
AnnotationID:3609GeneID:3601
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 14:02:52
Gene Name:nqrD
Confidence Code:2
GeneProduct:Na+-translocating NADH:uniquinone oxidoreductase subunit Nqr4
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1347
Secondary Functional Category(ies):
EC Number:1.6.5.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAN54177.1|AE015555_4 (AE015555) NADH:ubiquinone oxidoreductase, Na translocating,
           hydrophobic membrane protein NqrD [Shewanella oneidensis
           MR-1]
          Length = 210

 Score =  309 bits (792), Expect = 7e-84
 Identities = 150/208 (72%), Positives = 179/208 (86%)

>gb|AAP95352.1| (AE017151) Na+-translocating NADH-ubiquinone oxidoreductase,
           subunit D [Haemophilus ducreyi 35000HP]
          Length = 207

 Score =  297 bits (761), Expect = 3e-80
 Identities = 144/205 (70%), Positives = 176/205 (85%)

>gb|AAM84535.1|AE013698_9 (AE013698) Na-translocating NADH ubiquinone oxidoreductase
           [Yersinia pestis KIM]
          Length = 209

 Score =  297 bits (761), Expect = 3e-80
 Identities = 146/207 (70%), Positives = 176/207 (85%)
Structural Features:
COG1347, NqrD, Na+-transporting NADH:ubiquinone oxidoreductase, 
subunit NqrD 
[Energy production and conversion]
CD-Length = 208 residues, 100.0% aligned
Score =  327 bits (839), Expect = 8e-91
Identities = 154/208 (74%), Positives = 179/208 (86%)
Genomic Context:
Comment:
ReferenceID:14889
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24347
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36059
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3601_cdd.html
URL:
ReferenceID:36456
Author/Investigator(s): Hayashi M, Hirai K, Unemoto T.
Title: Sequencing and the alignment of structural genes in the nqr operon encoding the Na(+)-translocating NADH-quinone reductase from Vibrio alginolyticus.
PubMed: 7729558
MedLine:
Source:
FEBS Lett. 1995 Apr 17;363(1-2):75-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95246889&dopt=Abstract
ReferenceID:36463
Author/Investigator(s): Beattie P, Tan K, Bourne RM, Leach D, Rich PR, Ward FB.
Title: Cloning and sequencing of four structural genes for the Na(+)-translocating NADH-ubiquinone oxidoreductase of Vibrio alginolyticus.
PubMed: 7805867
MedLine:
Source:
FEBS Lett. 1994 Dec 19;356(2-3):333-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95104445&dopt=Abstract
Homologs By Global Alignment
Gene ID:3601

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5771 PA2996_tr translation of PA2996 224 99.99 99.99 0 1119.0
161111 gb|AAG06384.1|AE004724_13 (AE004724) Na+-translocating NADH:uniquinone oxidoreductase subunit Nqr4 [Pseudomonas aeruginosa PAO1] 224 99.55 99.99 0 1116.0
161112 gb|AAN54177.1|AE015555_4 (AE015555) NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD [Shewanella oneidensis MR-1] 224 66.96 79.91 14 789.0
161115 emb|CAC92472.1| (AJ414156) Na+-translocating NADH-quinone reductase subunit D [Yersinia pestis CO92] 224 65.17 78.57 15 759.0
161114 gb|AAM84535.1|AE013698_9 (AE013698) Na-translocating NADH ubiquinone oxidoreductase [Yersinia pestis KIM] 224 65.17 78.57 15 759.0
GC ORFID: 46603How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2996Glimmer Score:
Start: 2738753Stop: 2738079
Length: 675
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2996 translation of PA2996Homolog Bit Score 435.0
Other Homologs: t_PA2996 (ORF: GLIMMER)
GC ORF Sequence
GTGATGGCTGCTCAACCCACGATCCGCGAAGTCCTGTTCAATCCGGTCTTCCAGAACAATCCGATCGGCCTG
CAGATCCTCGGGATCTGCTCGGCGCTGGCGGTAACCTCGAACCTGAAGACCGCTACCGTCATGGCCATCGCC
CTGACCCTGGTGACCGGCTTCTCCAACCTGTTCATCTCGATGATCCGCCGGCAGATTCCCAGCTCGATCCGG
ATGATCGTGCAGATGGTGATCATCGCCTCGCTGGTGATCGTCGTCGACCAGGTGCTCAAGGCCTATGCCTAT
AGCCTGAGCAAGCAGCTCTCGGTGTTCGTCGGGCTGATCATCACCAACTGCATCGTGATGGGCCGCGCCGAA
GCCTTCGCCATGGCCAACCCGCCGCTCGTGTCGTTCTTCGACGGCATCGGCAACGGTCTCGGCTACAGCGCC
ATGCTGCTGGTGCTGGGCTTCGTCCGCGAGCTGTTCGGCGCCGGCAAGCTTTACGGCATCAGCGTGTTGCCG
ACGGTCAACGATGGCGGCTGGTACCAGCCGAACGGCCTGCTCCTGCTGCCGCCTTCGGCGTTCTTCCTGATC
GGCCTGATCATCTGGGCCCTGCGGACCTGGAAGAAAGACCAGGTCGAGGCCCCGACCTACAAGATGGCCCCG
CAGGTATCCAGCAAGGAGGCTTACTGA