ViewGene
Locus Name:
GeneID:
Location:

GeneID:3600
TrivialName: PA14_35390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35390
PAO1 Ortholog Locus:PA2257
Sequence Length:648
Protein Length:215
Start: 3147369
Stop: 3146722
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05645.1|AE004651_7 (AE004651) pyoverdine biosynthesis protein PvcD [Pseudomonas aeruginosa PAO1]
Identities = 213/215 (99%), Positives = 213/215 (99%)
Sequence:
ATGACTGAGCGTAAACGCTGGCTGGCCGGCTGCCTCTCGGCCCTGCTTTCCCTGCCGCTGGCCGCCGCCGTG
CCGGGCCCGGACGCGCCGGCCGACCTGGCGCGCGGCAAGGCGATGGCGCAGAAGATGTGCTCGCGCTGCCAC
GACGACGACGGCAACGGCGGGCCACGACCGAACCGCAGCTACCCGAAGCTCGCCGGGCTCGACCGGGAATAC
CTGTACAAGCAGATCTACGACCTCAAGACCCAGCGCCGGCGCAACCCGGCCACCAACGGTCGCGGCGAGGAG
CTGAGCGCGGCGGACGTGGTCAACGTCTCCGCCTGGTTCGCCGCCCAGCGCATGAGTGCCGGCGAGCAGACC
CTGGCCGACCCGGCGCAACGCGAACGCGGTCGCCAGCTCTTCGAGAACGGCCTGGCGCAGCGCGGCGTACCC
CCCTGCGTCACCTGCCACGGGCCCGCCGCCCAGGGCCTGGCGGCGCTGAAGGCGCCGCGCCTTGCCGGGCAA
TGGGCGGAATACCTGGCAACCCAGTTGCACGGTTTCCGCGACGGCAAGCGCGGCAACAGCGCGACCATGCGC
GCGGTCGCCGGCGGCCTGGAGGATAGTGACATCCAGGCGCTCGCCGGCTACCTGGGCAGCCTGGGGCCGTAA
Translation:
MTERKRWLAGCLSALLSLPLAAAVPGPDAPADLARGKAMAQKMCSRCHDDDGNGGPRPNRSYPKLAGLDREY
LYKQIYDLKTQRRRNPATNGRGEELSAADVVNVSAWFAAQRMSAGEQTLADPAQRERGRQLFENGLAQRGVP
PCVTCHGPAAQGLAALKAPRLAGQWAEYLATQLHGFRDGKRGNSATMRAVAGGLEDSDIQALAGYLGSLGP*
AnnotationID:3608GeneID:3600
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:47
Gene Name:pvcD
Confidence Code:1
GeneProduct:pyoverdine biosynthesis protein PvcD
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2863
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2863, COG2863, Cytochrome c553 [Energy production and conversion]
CD-Length = 121 residues, 100.0% aligned
Score =  104 bits (261), Expect = 7e-24
Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 8/129 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7203




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24345




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32522




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3600_cdd.html


    		




 
URL:

















    ReferenceID:34446




  
Author/Investigator(s):
        Stintzi A, Johnson Z, Stonehouse M, Ochsner U, Meyer JM, Vasil ML, Poole K.





  
Title:
        The pvc gene cluster of Pseudomonas aeruginosa: role in synthesis of the pyoverdine chromophore and regulation by PtxR and PvdS.




  
PubMed:
        10383985


MedLine:
        




    
Source:
J Bacteriol. 1999 Jul;181(13):4118-24.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10383985









           
Homologs By Global Alignment 

           

       



     
Gene ID:3600
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5770
                           PA2257_tr
                           translation of PA2257
                           215
                           99.06
                           99.06
                           0
                           1119.0
     

     
     
161108
                           gb|AAG05645.1|AE004651_7
                           (AE004651) pyoverdine biosynthesis protein PvcD [Pseudomonas aeruginosa PAO1]
                           215
                           99.06
                           99.06
                           0
                           1119.0
     

     
     
161109
                           gb|AAC21674.1|
                           (AF002222) PvcD [Pseudomonas aeruginosa]
                           215
                           99.06
                           99.06
                           0
                           1119.0
     

     
     
161110
                           gb|AAN65760.1|AE016202_3
                           (AE016774) cytochrome c4 [Pseudomonas putida KT2440]
                           222
                           36.48
                           52.25
                           24
                           348.0
     

     






      

          
GC ORFID: 46602How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2257Glimmer Score: 

          
Start: 1806547Stop: 1807194

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2257 translation of PA2257Homolog Bit Score 435.0

          
Other Homologs:  t_PA2257 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGAGCGTAAACGCTGGCTGGCCGGCTGCCTCTCGGCCCTGCTTTCCCTGCCGCTGGCCGCCGCCGTG 
CCGGGCCCGGACGCGCCGGCCGACCTGGCGCGCGGCAAGGCGATGGCGCAGAAGATGTGCTCGCGCTGCCAC 
GACGACGACGGCAACGGCGGGCCACGACCGAACCGCAGCTACCCGAAGCTCGCCGGGCTCGACCGGGAATAC 
CTGTACAAGCAGATCTACGACCTCAAGACCCAGCGCCGGCGCAACCCGGCCACCAACGGTCGCGGCGAGGAG 
CTGAGCGCGGCGGACGTGGTCAACGTCTCCGCCTGGTTCGCCGCCCAGCGCATGAGTGCCGGCGAGCAGACC 
CTGGCCGACCCGGCGCAACGCGAACGCGGTCGCCAGCTCTTCGAGAACGGCCTGGCGCAGCGCGGCGTACCC 
CCCTGCGTCACCTGCCACGGGCCCGCCGCCCAGGGCCTGGCGGCGCTGAAGGCGCCGCGCCTTGCCGGGCAA 
TGGGCGGAATACCTGGCAACCCAGTTGCACGGTTTCCGCGACGGCAAGCGCGGCAACAGCGCGACCATGCGC 
GCGGTCGCCGGCGGCCTGGAGGATAGTGACATCCAGGCGCTCGCCGGCTACCTGGGCAGCCTGGGGCCGTAA