ViewGene
Locus Name:
GeneID:
Location:

GeneID:360
TrivialName: PA14_23510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23510
PAO1 Ortholog Locus:PA3138
Sequence Length:2013
Protein Length:670
Start: 2045728
Stop: 2047740
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06526.1|AE004737_12 (AE004737) excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
Identities = 669/670 (99%), Positives = 670/670 (100%)
Sequence:
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAAGCCATCCGGCAGATGGTC
GAGGGGCTGGAGGCGGGGCTTTCGCACCAGACCCTGCTGGGGGTGACGGGCTCTGGCAAGACTTTCAGCATC
GCCAACGTGATTGCCCAGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACCCTGGCGGCCCAGCTC
TACGGGGAGTTCAAGACGTTCTTCCCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTACTACCAG
CCGGAGGCCTACGTACCGTCTTCCGATACCTATATCGAGAAGGACTCCTCGATCAACGACCATATCGAGCAG
ATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGTCCGGATGCGATCATCGTCGCCACCGTATCGTCCATC
TACGGCCTCGGTGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTGGACCGCGGCGACCGCATCGACCAG
CGCGAACTGTTACGGCGACTGACCAGCCTGCAGTACACCCGCAACGACATGGATTTCGCCCGTGCGACTTTC
CGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATTCGTGTCGAGTTGTTC
GACGACGAGGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACCCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAGGCC
GAACTCAAGGAACGCCTGGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGC
ACGCGTTTCGACCTGGAGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTATCTT
TCCGGGCGGGCCCCCGGCGAGCCGCCGCCGACGCTCTACGACTACCTGCCGGCCAACTCGCTGCTGGTTATC
GACGAATCGCACGTCAGCGTTCCGCAGGTCGGCGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTG
GTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACCGGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTG
AGTCCGCAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCGGAACATGCCGGGCGGATCATCGAG
CAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGCCCGGCGATGACCCAGGTGGATGAC
CTGCTCTCGCAGATCCGCCAGCGGGTGGCCAAGGACGAGCGGGTGCTGGTGACTACCCTGACCAAGCGCATG
GCCGAAGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTGCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTG
CGCGAAGGCCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGCTTCCTGCGC
TCGGAGCGCTCGCTGATCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCC
GACAACGTCACCGGCTCGATGCAGCGTGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCCTTC
AACGAAGCCCATGGCATCGTGCCCAAGGGGGTGCGCAAGGACATCAAGGACATTCTCGAAGGCGCCGTGGTG
CCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTGGCGGAGGAGAGCGGGCGCTACGAGAACGAACTG
CGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAGATGTACCAGTTGGCCCGCGACCTG
GAGTTCGAGGCGGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCTGGTCAACGTCTGA
Translation:
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQL
YGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSI
YGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELF
DDEVESLSAFDPLTGEVIRKLPRFTFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQR
TRFDLEMILELGYCNGIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETL
VEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHAGRIIEQVVRPTGLVDPEIEVRPAMTQVDD
LLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVERVEIIRDLRAGAFDVLVGINLL
REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQRAIDETERRRAKQIAF
NEAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEKMYQLARDL
EFEAAAQLRDEIQTLRERLVNV*
AnnotationID:369GeneID:360
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 09:09:16
Gene Name:uvrB
Confidence Code:1
GeneProduct:excinuclease ABC subunit B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0556
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67589.1|AE016388_9 (AE016781) excinuclease ABC, B subunit [Pseudomonas putida KT2440]
          Length = 671

 Score = 1154 bits (2984), Expect = 0.0
 Identities = 583/670 (87%), Positives = 626/670 (93%), Gaps = 1/670 (0%)

>gb|AAM86577.1|AE013904_1 (AE013904) excision nuclease subunit B [Yersinia pestis KIM]
          Length = 671

 Score =  956 bits (2470), Expect = 0.0
 Identities = 483/670 (72%), Positives = 571/670 (85%), Gaps = 5/670 (0%)

>gb|AAG55150.1|AE005259_1 (AE005259) DNA repair; excision nuclease subunit B [Escherichia
           coli O157:H7 EDL933]
          Length = 673

 Score =  937 bits (2421), Expect = 0.0
 Identities = 472/667 (70%), Positives = 561/667 (84%), Gaps = 3/667 (0%)








 
Structural Features:
COG0556, UvrB, Helicase subunit of the DNA excision repair complex 
[DNA replication, recombination, and repair]
CD-Length = 663 residues,  99.4% aligned
Score = 1108 bits (2868), Expect = 0.0
Identities = 465/669 (69%), Positives = 554/669 (82%), Gaps = 11/669 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:723




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17865




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32384




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:360_cdd.html


    		




 
URL:

















    ReferenceID:33926




  
Author/Investigator(s):
        Burrows LL, Charter DF, Lam JS.





  
Title:
        Molecular characterization of the Pseudomonas aeruginosa serotype O5 (PAO1) B-band lipopolysaccharide gene cluster.




  
PubMed:
        8939432


MedLine:
        




    
Source:
Mol Microbiol. 1996 Nov;22(3):481-95.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8939432

















    ReferenceID:33927




  
Author/Investigator(s):
        Rivera E, Vila L, Barbe J.





  
Title:
        The uvrB gene of Pseudomonas aeruginosa is not DNA damage inducible.




  
PubMed:
        8808952


MedLine:
        




    
Source:
J Bacteriol. 1996 Sep;178(18):5550-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8808952









           
Homologs By Global Alignment 

           

       



     
Gene ID:360
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
604
                           PA3138_tr
                           translation of PA3138
                           670
                           99.85
                           99.99
                           0
                           3382.0
     

     
     
28341
                           gb|AAG06526.1|AE004737_12
                           (AE004737) excinuclease ABC subunit B [Pseudomonas aeruginosa PAO1]
                           670
                           99.85
                           99.99
                           0
                           3382.0
     

     
     
28342
                           emb|CAA63759.1|
                           (X93486) uvrB [Pseudomonas aeruginosa]
                           670
                           99.85
                           99.99
                           0
                           3379.0
     

     
     
28343
                           gb|AAN67589.1|AE016388_9
                           (AE016781) excinuclease ABC, B subunit [Pseudomonas putida KT2440]
                           671
                           86.88
                           93.29
                           1
                           2984.0
     

     
     
28344
                           gb|AAO55681.1|
                           (AE016863) excinuclease ABC, B subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           671
                           85.69
                           93.74
                           1
                           2967.0
     

     






      

          
GC ORFID: 43362How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3138Glimmer Score: 

          
Start: 2908203Stop: 2906191

          
Length: 2013


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3138 translation of PA3138Homolog Bit Score 1307.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene961 (ORF: BLASTX 1144.0), t_PA3138 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAAGCCATCCGGCAGATGGTC 
GAGGGGCTGGAGGCGGGGCTTTCGCACCAGACCCTGCTGGGGGTGACGGGCTCTGGCAAGACTTTCAGCATC 
GCCAACGTGATTGCCCAGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACCCTGGCGGCCCAGCTC 
TACGGGGAGTTCAAGACGTTCTTCCCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTACTACCAG 
CCGGAGGCCTACGTACCGTCTTCCGATACCTATATCGAGAAGGACTCCTCGATCAACGACCATATCGAGCAG 
ATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGTCCGGATGCGATCATCGTCGCCACCGTATCGTCCATC 
TACGGCCTCGGTGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTGGACCGCGGCGACCGCATCGACCAG 
CGCGAACTGTTACGGCGACTGACCAGCCTGCAGTACACCCGCAACGACATGGATTTCGCCCGTGCGACTTTC 
CGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATTCGTGTCGAGTTGTTC 
GACGACGAGGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC 
ACCTTCTACCCCAAGAGCCACTACGTGACCCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAGGCC 
GAACTCAAGGAACGCCTGGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGC 
ACGCGTTTCGACCTGGAGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTATCTT 
TCCGGGCGGGCCCCCGGCGAGCCGCCGCCGACGCTCTACGACTACCTGCCGGCCAACTCGCTGCTGGTTATC 
GACGAATCGCACGTCAGCGTTCCGCAGGTCGGCGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTG 
GTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACCGGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTG 
AGTCCGCAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCGGAACATGCCGGGCGGATCATCGAG 
CAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGCCCGGCGATGACCCAGGTGGATGAC 
CTGCTCTCGCAGATCCGCCAGCGGGTGGCCAAGGACGAGCGGGTGCTGGTGACTACCCTGACCAAGCGCATG 
GCCGAAGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTGCGCTACCTGCACTCGGACATCGATACC 
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTG 
CGCGAAGGCCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGCTTCCTGCGC 
TCGGAGCGCTCGCTGATCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCC 
GACAACGTCACCGGCTCGATGCAGCGTGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCCTTC 
AACGAAGCCCATGGCATCGTGCCCAAGGGGGTGCGCAAGGACATCAAGGACATTCTCGAAGGCGCCGTGGTG 
CCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTGGCGGAGGAGAGCGGGCGCTACGAGAACGAACTG 
CGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAGATGTACCAGTTGGCCCGCGACCTG 
GAGTTCGAGGCGGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCTGGTCAACGTCTGA