ViewGene
Locus Name:
GeneID:
Location:

GeneID:3599
TrivialName: PA14_04380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04380
PAO1 Ortholog Locus:PA0335
Sequence Length:654
Protein Length:217
Start: 392064
Stop: 391411
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03724.1|AE004471_7 (AE004471) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 215/217 (99%), Positives = 217/217 (100%)
Sequence:
GTGCGTCTGGCCCTTTTCGATCTCGACAACACCCTGCTCGCCGGCGACAGCGACCATAGCTGGGGCGAATGG
CTGTGCCAGCGCGGCCTGGTCGACGCCGCCGAATACCAGGCGCGCAACGACGCCTTCTATGCCGACTACGTG
GCCGGCAAGCTCGACGTCCTTGCCTACCAGGCCTTCACCCAGGCGATCCTCGGTCGCACCGATATGGCCCAG
CTGGAAACCTGGCACCGCCAATTCATGCAGGAAGTGATCGAGCCGATCGTGCTGGCCAAGGGCGAGGCGCTG
CTCGCCGAGCACCGCGCCGCCGGCGACCGGCTGGTGATCATCACCGCCACCAACCGCTTCGTCACCGGCCCG
ATCGCCGAACGACTCGGGGTGGAGACCCTGATTGCCACCGAGTGCGAGATGCGCGACGGCCGCTACACCGGG
CAGACCTTCGACGTGCCCTGCTTCCAGGGCGGCAAGGTGGTTCGCCTGCAACGCTGGCTCGACGAGAACGGC
CTGAACCTGGAAGGCGCCAGCTTCTATAGCGACTCGCTGAACGACCTGCCGCTGCTGGAGAAGGTCAGCCGG
CCGGTGGCCGTCGACCCCGATCCGCGCCTGCGCGCCGAGGCGGAAAAACGCGGCTGGCCGATCATTTCCCTG
CGTTGA
Translation:
MRLALFDLDNTLLAGDSDHSWGEWLCQRGLVDAAEYQARNDAFYADYVAGKLDVLAYQAFTQAILGRTDMAQ
LETWHRQFMQEVIEPIVLAKGEALLAEHRAAGDRLVIITATNRFVTGPIAERLGVETLIATECEMRDGRYTG
QTFDVPCFQGGKVVRLQRWLDENGLNLEGASFYSDSLNDLPLLEKVSRPVAVDPDPRLRAEAEKRGWPIISL
R*
AnnotationID:3607GeneID:3599
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:06
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA0335
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0560
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58712.1| (AE016875) HAD-superfamily hydrolase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 218

 Score =  316 bits (809), Expect = 7e-86
 Identities = 148/217 (68%), Positives = 182/217 (83%)

>gb|AAN70712.1|AE016715_1 (AE016793) hydrolase, haloacid dehalogenase-like family
           [Pseudomonas putida KT2440]
          Length = 218

 Score =  311 bits (798), Expect = 1e-84
 Identities = 146/217 (67%), Positives = 179/217 (82%)








 
Structural Features:
COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism] 
CD-Length = 212 residues,  93.9% aligned
Score =  159 bits (404), Expect = 2e-40
Identities = 74/214 (34%), Positives = 103/214 (48%), Gaps = 15/214 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14887




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24343




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33678




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3599_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3599
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5768
                           PA0335_tr
                           translation of PA0335
                           217
                           99.07
                           99.99
                           0
                           1120.0
     

     
     
161094
                           gb|AAG03724.1|AE004471_7
                           (AE004471) hypothetical protein PA0335 [Pseudomonas aeruginosa PAO1]
                           217
                           98.61
                           99.99
                           0
                           1117.0
     

     
     
161095
                           gb|AAO58712.1|
                           (AE016875) HAD-superfamily hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           218
                           67.43
                           83.48
                           1
                           805.0
     

     
     
161096
                           gb|AAN70712.1|AE016715_1
                           (AE016793) hydrolase, haloacid dehalogenase-like family [Pseudomonas putida KT2440]
                           218
                           66.51
                           82.11
                           1
                           794.0
     

     
     
161097
                           emb|CAD84008.1|
                           (BX321856) Haloacid dehalogenase/epoxide hydrolase family [Nitrosomonas europaea ATCC 19718]
                           223
                           50.22
                           65.02
                           8
                           558.0
     

     






      

          
GC ORFID: 46601How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0335Glimmer Score: 

          
Start: 6193406Stop: 6192753

          
Length: 654


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0335 translation of PA0335Homolog Bit Score 436.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6910 (ORF: BLASTX 315.0), psyr_15may02_Scaffold16_revised_gene2681 (ORF: BLASTX 179.0), t_PA1143 (ORF: BLASTX 163.0), t_PA0335 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGTCTGGCCCTTTTCGATCTCGACAACACCCTGCTCGCCGGCGACAGCGACCATAGCTGGGGCGAATGG 
CTGTGCCAGCGCGGCCTGGTCGACGCCGCCGAATACCAGGCGCGCAACGACGCCTTCTATGCCGACTACGTG 
GCCGGCAAGCTCGACGTCCTTGCCTACCAGGCCTTCACCCAGGCGATCCTCGGTCGCACCGATATGGCCCAG 
CTGGAAACCTGGCACCGCCAATTCATGCAGGAAGTGATCGAGCCGATCGTGCTGGCCAAGGGCGAGGCGCTG 
CTCGCCGAGCACCGCGCCGCCGGCGACCGGCTGGTGATCATCACCGCCACCAACCGCTTCGTCACCGGCCCG 
ATCGCCGAACGACTCGGGGTGGAGACCCTGATTGCCACCGAGTGCGAGATGCGCGACGGCCGCTACACCGGG 
CAGACCTTCGACGTGCCCTGCTTCCAGGGCGGCAAGGTGGTTCGCCTGCAACGCTGGCTCGACGAGAACGGC 
CTGAACCTGGAAGGCGCCAGCTTCTATAGCGACTCGCTGAACGACCTGCCGCTGCTGGAGAAGGTCAGCCGG 
CCGGTGGCCGTCGACCCCGATCCGCGCCTGCGCGCCGAGGCGGAAAAACGCGGCTGGCCGATCATTTCCCTG 
CGTTGA