ViewGene
Locus Name:
GeneID:
Location:

GeneID:3598
TrivialName: PA14_68800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68800
PAO1 Ortholog Locus:PA5208
Sequence Length:678
Protein Length:225
Start: 6135924
Stop: 6135247
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08593.1|AE004933_9 (AE004933) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 224/225 (99%), Positives = 225/225 (100%)
Sequence:
ATGCCGACCAATCCGTTCATCAGCCTGTTCGGCCGTTCGCCGATCGGGCCGATGCAGCAGCACATCGCCAAG
GCCCACGAATGCGCGGCCGGCCTGTTGCCGTTCTTCCGCGCGGTGATCGCCGAGGACTGGGCGCAGGTCGAA
CAGGTTCAGCAGGACATGGTGCGACTGGAGCAGGAAGCCGATCGGCTGAAGAAGAACGTCCGGATGCACCTG
CCCAAGAGCCTGTTCCTTCCGGTGCCGCGCTCCGATCTGTTGGAGCTGCTCAGTGTACAGGACAAAGTCGCC
AATCGCGCCAAGGACATCGCCGGGCTGATGCTCGGCCGGCGCATGCGCATCCCGCTGCCGCTGCAGGGCCAG
ATGCTCGCCTACGTGCAGCGCTCGGTGGACGCCAGCGCCCAGGCGTTGCGGGTAGTCAACGAACTCAACGAA
CTGCTCGAGACCGGCTTCGGCGGGCGCGAGACCAGTCTGGTGGAGAGCATGGTGGAGGAACTCGAGGCGATC
GAGAACGACACCGACCGCATCCAGGTCGAGGTGCGCCGCGAGCTGTTCCGCCTGGAAAGCGAGCTGCCGCCG
GTGGACGTGATGTTCCTCTACCAGATCATCGAATGGATCGGCGATGTCGCCGACCGCGCCCAGCGGGTCGGC
AACCGCCTGGAGCAATTGCTGGCGCGTTGA
Translation:
MPTNPFISLFGRSPIGPMQQHIAKAHECAAGLLPFFRAVIAEDWAQVEQVQQDMVRLEQEADRLKKNVRMHL
PKSLFLPVPRSDLLELLSVQDKVANRAKDIAGLMLGRRMRIPLPLQGQMLAYVQRSVDASAQALRVVNELNE
LLETGFGGRETSLVESMVEELEAIENDTDRIQVEVRRELFRLESELPPVDVMFLYQIIEWIGDVADRAQRVG
NRLEQLLAR*
AnnotationID:3606GeneID:3598
AnnotatorUID: diggins
Modification Date/Time: 2004-10-19 11:11:36
Gene Name:
Confidence Code:3
GeneProduct:putative phosphate transport regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1392
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO09132.1|AE016799_30 (AE016799) Phosphate transport regulator [Vibrio vulnificus CMCP6]
          Length = 228

 Score =  247 bits (630), Expect = 4e-65
 Identities = 117/225 (52%), Positives = 166/225 (73%)








 
Structural Features:
COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) 
[Inorganic ion transport and metabolism]








   
Genomic Context:






   
Comment:


















    ReferenceID:7199




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24341




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34843




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3598_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3598
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5767
                           PA5208_tr
                           translation of PA5208
                           225
                           99.55
                           99.99
                           0
                           1121.0
     

     
     
161084
                           gb|AAG08593.1|AE004933_9
                           (AE004933) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           225
                           99.55
                           99.99
                           0
                           1121.0
     

     
     
161086
                           gb|AAN56751.1|AE015810_10
                           (AE015810) conserved hypothetical protein TIGR00153 [Shewanella oneidensis MR-1]
                           226
                           51.76
                           73.89
                           1
                           634.0
     

     
     
161085
                           dbj|BAC58682.1|
                           (AP005074) conserved hypothetical protein [Vibrio parahaemolyticus]
                           228
                           51.75
                           74.12
                           3
                           638.0
     

     
     
161089
                           dbj|BAC93339.1|
                           (AP005332) phosphate transport regulator [Vibrio vulnificus YJ016]
                           228
                           51.31
                           72.80
                           3
                           630.0
     

     






      

          
GC ORFID: 46600How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5208Glimmer Score: 

          
Start: 5399610Stop: 5398933

          
Length: 678


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5208 translation of PA5208Homolog Bit Score 436.0

          
Other Homologs:  t_PA5208 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGACCAATCCGTTCATCAGCCTGTTCGGCCGTTCGCCGATCGGGCCGATGCAGCAGCACATCGCCAAG 
GCCCACGAATGCGCGGCCGGCCTGTTGCCGTTCTTCCGCGCGGTGATCGCCGAGGACTGGGCGCAGGTCGAA 
CAGGTTCAGCAGGACATGGTGCGACTGGAGCAGGAAGCCGATCGGCTGAAGAAGAACGTCCGGATGCACCTG 
CCCAAGAGCCTGTTCCTTCCGGTGCCGCGCTCCGATCTGTTGGAGCTGCTCAGTGTACAGGACAAAGTCGCC 
AATCGCGCCAAGGACATCGCCGGGCTGATGCTCGGCCGGCGCATGCGCATCCCGCTGCCGCTGCAGGGCCAG 
ATGCTCGCCTACGTGCAGCGCTCGGTGGACGCCAGCGCCCAGGCGTTGCGGGTAGTCAACGAACTCAACGAA 
CTGCTCGAGACCGGCTTCGGCGGGCGCGAGACCAGTCTGGTGGAGAGCATGGTGGAGGAACTCGAGGCGATC 
GAGAACGACACCGACCGCATCCAGGTCGAGGTGCGCCGCGAGCTGTTCCGCCTGGAAAGCGAGCTGCCGCCG 
GTGGACGTGATGTTCCTCTACCAGATCATCGAATGGATCGGCGATGTCGCCGACCGCGCCCAGCGGGTCGGC 
AACCGCCTGGAGCAATTGCTGGCGCGTTGA