ViewGene
Locus Name:
GeneID:
Location:

GeneID:3597
TrivialName: PA14_10220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10220
PAO1 Ortholog Locus:PA4154
Sequence Length:669
Protein Length:222
Start: 879293
Stop: 879961
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07541.1|AE004832_1 (AE004832) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 222/222 (100%), Positives = 222/222 (100%)
Sequence:
ATGTCCCTATCCCGTCGCATCCCCGCCGCTCTTTCCCCGTTCCAGAACCGCGTCATCGGAGCCTGCCTGCTC
GGCGGCCTGCTGGCGGCCGGCGCCCCGGCGCAGGCCGAGGAGGCGACCGGCAACGCGCGCTGGGTGAGCGAC
AGCCTGACCACTTTCGTGCGCAGCGGCCCCACCGATGGCTATCGCATCGTTGGCACCCTCACCTCCGGGCAG
AAGGTCGAGCTGCTTGGCACCCAGGGCAACTACAGCCAGGTGCGCGGCGAGAACGGCAGCACCGTGTGGATT
CCCAGCCGCGACTTGCAGGAGGTTCCCGGCCAGGCCGAGCGCCTGCCGCAACTGGAACAGAAGGTGGCCGCC
CTGACCGCTGAGCTGGACGGCATCAACGACACCTGGAAGACCCGCGTGCAGGGCATGCAGGAAACCCTCGAC
ACGCGCAAGAAGTTGATCGACGAATTGCAGGCGGCGCGCAGCAACCTGGACGCCGAGCTCGGCAAGGCCCGC
TCCGACCTGCGTGCGGTGCAGGCGCAACTGGGCGACGAGAACAAGCAGGTGCTGATGCGCTACATGGTCTAC
GGCGGCAGCATCGCCGGCGCCGGCCTGTTCGCCGGGCTGATCCTGCCGTCGCTGCTGAGGGTGCGGCGCAAG
CGCAACGACAAGTGGTTCTGA
Translation:
MSLSRRIPAALSPFQNRVIGACLLGGLLAAGAPAQAEEATGNARWVSDSLTTFVRSGPTDGYRIVGTLTSGQ
KVELLGTQGNYSQVRGENGSTVWIPSRDLQEVPGQAERLPQLEQKVAALTAELDGINDTWKTRVQGMQETLD
TRKKLIDELQAARSNLDAELGKARSDLRAVQAQLGDENKQVLMRYMVYGGSIAGAGLFAGLILPSLLRVRRK
RNDKWF*
AnnotationID:3605GeneID:3597
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 21:09:31
Gene Name:
Confidence Code:3
GeneProduct:putative SH3 domain protein
Cell Localization:()
Synonyms:ygiM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3103
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN82250.1|AE016767_10 (AE016767) Hypothetical protein ygiM precursor [Escherichia coli
           CFT073]
          Length = 206

 Score =  150 bits (378), Expect = 7e-36
 Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 9/207 (4%)







 
Structural Features:
COG3103, COG3103, SH3 domain protein [Signal transduction mechanisms]
CD-Length = 205 residues, 100.0% aligned
Score =  212 bits (541), Expect = 3e-56
Identities = 92/210 (43%), Positives = 122/210 (58%), Gaps = 7/210 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24339




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36890




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3597_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3597
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5766
                           PA4154_tr
                           translation of PA4154
                           222
                           99.99
                           99.99
                           0
                           1121.0
     

     
     
161068
                           gb|AAG07541.1|AE004832_1
                           (AE004832) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           222
                           99.99
                           99.99
                           0
                           1121.0
     

     
     
161070
                           gb|AAN69231.1|AE016558_1
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           222
                           63.96
                           77.02
                           6
                           692.0
     

     
     
161069
                           gb|AAO55428.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           251
                           57.76
                           69.72
                           31
                           716.0
     

     
     
161081
                           gb|AAG58189.1|AE005535_1
                           (AE005535) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
                           225
                           38.22
                           54.66
                           22
                           379.0
     

     






      

          
GC ORFID: 46599How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4154Glimmer Score: 

          
Start: 4074644Stop: 4073976

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4154 translation of PA4154Homolog Bit Score 436.0

          
Other Homologs:  t_PA4154 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTATCCCGTCGCATCCCCGCCGCTCTTTCCCCGTTCCAGAACCGCGTCATCGGAGCCTGCCTGCTC 
GGCGGCCTGCTGGCGGCCGGCGCCCCGGCGCAGGCCGAGGAGGCGACCGGCAACGCGCGCTGGGTGAGCGAC 
AGCCTGACCACTTTCGTGCGCAGCGGCCCCACCGATGGCTATCGCATCGTTGGCACCCTCACCTCCGGGCAG 
AAGGTCGAGCTGCTTGGCACCCAGGGCAACTACAGCCAGGTGCGCGGCGAGAACGGCAGCACCGTGTGGATT 
CCCAGCCGCGACTTGCAGGAGGTTCCCGGCCAGGCCGAGCGCCTGCCGCAACTGGAACAGAAGGTGGCCGCC 
CTGACCGCTGAGCTGGACGGCATCAACGACACCTGGAAGACCCGCGTGCAGGGCATGCAGGAAACCCTCGAC 
ACGCGCAAGAAGTTGATCGACGAATTGCAGGCGGCGCGCAGCAACCTGGACGCCGAGCTCGGCAAGGCCCGC 
TCCGACCTGCGTGCGGTGCAGGCGCAACTGGGCGACGAGAACAAGCAGGTGCTGATGCGCTACATGGTCTAC 
GGCGGCAGCATCGCCGGCGCCGGCCTGTTCGCCGGGCTGATCCTGCCGTCGCTGCTGAGGGTGCGGCGCAAG 
CGCAACGACAAGTGGTTCTGA