ViewGene
Locus Name:
GeneID:
Location:

GeneID:3595
TrivialName: PA14_27150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27150
PAO1 Ortholog Locus:PA2857
Sequence Length:684
Protein Length:227
Start: 2360094
Stop: 2359411
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06245.1|AE004712_5 (AE004712) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 227/227 (100%), Positives = 227/227 (100%)
Sequence:
ATGAGCGCCAGCATTCTCAACGCGCAGAACCTTAGCAAGGTTGTCGGTAGCGCGGAAGGCAAGTTGACCATC
CTCCACGACCTCTCCCTCGACCTCGCCCGCGGCGACAGCCTGGCGATCGTCGGCAGTTCCGGCTCCGGCAAG
TCGACCCTGCTCGGCCTGCTCGCCGGGCTCGACCAGCCCAGCGGCGGCGAGGTCCGTCTCGCCGGGCACGCC
CTCGGCGACCTCGACGAGGACCAGCGTGCGCGCGTCCGCGCGGCCCATGTAGGCTTCGTGTTCCAGTCGTTC
CAGTTGCTCGACAGCCTCGATGCGCTGGAGAACGTGATGCTGCCCCTGGAGCTGGAAGGCCGCGCCGACGCT
CGCCAGCGCGCCAGAGAACTGCTCGAGCGAGTCGGCCTCGGCCAACGCCTGGGCCACTATCCGCGCCAGCTC
TCCGGCGGCGAGCAGCAGCGGGTCGCCATTGCCCGTGCCTTCGCGGCGGAGCCGGACGTGCTGTTCGCCGAC
GAACCCACCGGCAACCTCGACAGCGCCACCGGCGAGCGGATCAGCGACCTGCTCTTCGAACTCAACCGCGAA
CGCGGTACCACCCTGGTCCTGGTTACCCACGACGAGCGTCTGGCGCATCGCTGCCGGCGCCTGATCCGTCTG
GAAAGCGGACGCCTGATCGACCGGGTCGAACCCTGA
Translation:
MSASILNAQNLSKVVGSAEGKLTILHDLSLDLARGDSLAIVGSSGSGKSTLLGLLAGLDQPSGGEVRLAGHA
LGDLDEDQRARVRAAHVGFVFQSFQLLDSLDALENVMLPLELEGRADARQRARELLERVGLGQRLGHYPRQL
SGGEQQRVAIARAFAAEPDVLFADEPTGNLDSATGERISDLLFELNRERGTTLVLVTHDERLAHRCRRLIRL
ESGRLIDRVEP*
AnnotationID:3603GeneID:3595
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 05:05:03
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4181,COG1136,cd00267
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67930.1|AE016425_7 (AE016782) ABC transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 228

 Score =  362 bits (928), Expect = 1e-99
 Identities = 191/226 (84%), Positives = 205/226 (90%)

>gb|AAO55781.1| (AE016863) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 227

 Score =  359 bits (922), Expect = 6e-99
 Identities = 187/227 (82%), Positives = 205/227 (90%)

>emb|CAD15420.1| (AL646066) PROBABLE ATP-BINDING ABC TRANSPORTER PROTEIN [Ralstonia
           solanacearum]
          Length = 236

 Score =  271 bits (692), Expect = 3e-72
 Identities = 141/221 (63%), Positives = 169/221 (76%), Gaps = 3/221 (1%)








 
Structural Features:
COG4181, Predicted ABC-type transport system involved in lysophospholipase 
L1 biosynthesis, ATPase component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 228 residues,  99.6% aligned
Score =  316 bits (812), Expect = 1e-87
Identities = 151/227 (66%), Positives = 177/227 (77%), Gaps = 2/227 (0%)

COG1136, SalX, ABC-type antimicrobial peptide transport system, 
ATPase component 
[Defense mechanisms]
CD-Length = 226 residues,  99.1% aligned
Score =  265 bits (680), Expect = 3e-72
Identities = 108/222 (48%), Positives = 148/222 (66%), Gaps = 3/222 (1%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues,  97.7% aligned
Score =  176 bits (448), Expect = 2e-45
Identities = 89/220 (40%), Positives = 130/220 (59%), Gaps = 11/220 (5%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7193




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24335




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36211




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3595_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3595
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5752
                           PA2857_tr
                           translation of PA2857
                           227
                           99.99
                           99.99
                           0
                           1121.0
     

     
     
160490
                           gb|AAG06245.1|AE004712_5
                           (AE004712) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           227
                           99.99
                           99.99
                           0
                           1121.0
     

     
     
160491
                           gb|AAN67930.1|AE016425_7
                           (AE016782) ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           228
                           83.77
                           89.91
                           1
                           927.0
     

     
     
160492
                           gb|AAO55781.1|
                           (AE016863) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           227
                           82.37
                           90.30
                           0
                           922.0
     

     
     
160496
                           emb|CAE38329.1|
                           (BX640432) probable ATP-binding ABC transporter protein [Bordetella parapertussis]
                           228
                           61.84
                           75.00
                           6
                           682.0
     

     






      

          
GC ORFID: 46597How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2857Glimmer Score: 

          
Start: 2593832Stop: 2594515

          
Length: 684


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2857 translation of PA2857Homolog Bit Score 436.0

          
Other Homologs:  t_PA2987 (ORF: BLASTX 208.0), t_PA4594 (ORF: BLASTX 199.0), psyr_15may02_Scaffold1_revised_gene899 (ORF: BLASTX 198.0), psyr_15may02_Scaffold5_revised_gene5985 (ORF: BLASTX 195.0), psyr_15may02_Scaffold6_revised_gene6607 (ORF: BLASTX 142.0), t_PA4064 (ORF: BLASTX 139.0), t_PA0374 (ORF: BLASTX 137.0), t_PA0073 (ORF: BLASTX 134.0), psyr_15may02_Scaffold1_revised_gene1332 (ORF: BLASTX 124.0), t_PA2857 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCAGCATTCTCAACGCGCAGAACCTTAGCAAGGTTGTCGGTAGCGCGGAAGGCAAGTTGACCATC 
CTCCACGACCTCTCCCTCGACCTCGCCCGCGGCGACAGCCTGGCGATCGTCGGCAGTTCCGGCTCCGGCAAG 
TCGACCCTGCTCGGCCTGCTCGCCGGGCTCGACCAGCCCAGCGGCGGCGAGGTCCGTCTCGCCGGGCACGCC 
CTCGGCGACCTCGACGAGGACCAGCGTGCGCGCGTCCGCGCGGCCCATGTAGGCTTCGTGTTCCAGTCGTTC 
CAGTTGCTCGACAGCCTCGATGCGCTGGAGAACGTGATGCTGCCCCTGGAGCTGGAAGGCCGCGCCGACGCT 
CGCCAGCGCGCCAGAGAACTGCTCGAGCGAGTCGGCCTCGGCCAACGCCTGGGCCACTATCCGCGCCAGCTC 
TCCGGCGGCGAGCAGCAGCGGGTCGCCATTGCCCGTGCCTTCGCGGCGGAGCCGGACGTGCTGTTCGCCGAC 
GAACCCACCGGCAACCTCGACAGCGCCACCGGCGAGCGGATCAGCGACCTGCTCTTCGAACTCAACCGCGAA 
CGCGGTACCACCCTGGTCCTGGTTACCCACGACGAGCGTCTGGCGCATCGCTGCCGGCGCCTGATCCGTCTG 
GAAAGCGGACGCCTGATCGACCGGGTCGAACCCTGA