ViewGene

Locus Name:
GeneID:
Location:

GeneID:3594
TrivialName: PA14_32530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32530
PAO1 Ortholog Locus:PA2482
Sequence Length:654
Protein Length:217
Start: 2825911
Stop: 2826564
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05870.1|AE004676_2 (AE004676) probable cytochrome c [Pseudomonas aeruginosa PAO1]
Identities = 216/217 (99%), Positives = 216/217 (99%)
Sequence:
ATGCCGGTTGCACACCGACTGCTGTTTTCATTGACCGCCTTGCTGGCGGCGACGGCCCAGGCCGCCGTCGAC
GGCCAGAAACTCTATACCCAGGGCGGCGCCAACCCGGCCGCCGCGGCCTGCGTCACCTGCCACGGCGCCGAT
GGCATGGGCCTGGCCGCCGCCGGCTTTCCGCGCCTGGCGGGCCTTCCCGCCGCCTACCTGAGCAAGCAGCTG
CACGACCTCAAGCAGGGCGGCAGTCGCGAGCACCCGGTGATGAAGGGCATAGCCGATGCTCTCGGCGACGAC
GAGATCCAGGCGCTCGCCACTACCCTCGCGGCAATGCCGGCGCCCAAGCCGGTGGAGCTGTCGCGCGTGGCC
ACCCCGCGCAGCCCCGGCGAGACCCTGGCGGTGCGTGGCGCCTGGGAGCGCAACATTCCCGAGTGCGTGACC
TGTCACGGTCCGGCCGGCAGCGGCGTGGGGGAGGCCTTCCCGCCGTTGCAGGGGCAGGGCGAGATGTACCTG
AGCAACCAGTTGCGCGCCTGGCAGCTTGGCACTCGCCGCAACGACCCGAACGATCTGATGGGACATATCGCC
AAATCCCTCAGCGAAGAGGAGATCCGCAGCGTCAGCCAGTTCTTCGCCACCCTCGGTCAGGCAGGAGGCCAG
CCATGA
Translation:
MPVAHRLLFSLTALLAATAQAAVDGQKLYTQGGANPAAAACVTCHGADGMGLAAAGFPRLAGLPAAYLSKQL
HDLKQGGSREHPVMKGIADALGDDEIQALATTLAAMPAPKPVELSRVATPRSPGETLAVRGAWERNIPECVT
CHGPAGSGVGEAFPPLQGQGEMYLSNQLRAWQLGTRRNDPNDLMGHIAKSLSEEEIRSVSQFFATLGQAGGQ
P*
AnnotationID:3602GeneID:3594
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:05
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c
Cell Localization:()
Synonyms:PA2482
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2863
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69417.1|AE016578_3 (AE016788) cytochrome c-type protein [Pseudomonas putida KT2440]
          Length = 217

 Score =  227 bits (578), Expect = 4e-59
 Identities = 114/208 (54%), Positives = 145/208 (69%), Gaps = 1/208 (0%)

Structural Features:
COG2863, COG2863, Cytochrome c553 
[Energy production and conversion]
CD-Length = 121 residues,  96.7% aligned
Score = 88.5 bits (219), Expect = 6e-19
Identities = 49/122 (40%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Genomic Context:
Comment:
ReferenceID:7191
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24333
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33026
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3594_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3594

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5751 PA2482_tr translation of PA2482 217 99.53 99.53 0 1122.0
160484 gb|AAG05870.1|AE004676_2 (AE004676) probable cytochrome c [Pseudomonas aeruginosa PAO1] 217 99.53 99.53 0 1122.0
160485 gb|AAN69417.1|AE016578_3 (AE016788) cytochrome c-type protein [Pseudomonas putida KT2440] 218 52.75 66.97 2 576.0
160487 emb|CAE38293.1| (BX640432) probable cytochrome C [Bordetella parapertussis] 253 40.31 47.82 52 431.0
160486 emb|CAE33461.1| (BX640446) probable cytochrome C [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 253 39.92 48.22 52 433.0
GC ORFID: 46596How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2482Glimmer Score:
Start: 2128013Stop: 2127360
Length: 654
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2482 translation of PA2482Homolog Bit Score 436.0
Other Homologs: t_PA2482 (ORF: GLIMMER)
GC ORF Sequence
ATGCCGGTTGCACACCGACTGCTGTTTTCATTGACCGCCTTGCTGGCGGCGACGGCCCAGGCCGCCGTCGAC
GGCCAGAAACTCTATACCCAGGGCGGCGCCAACCCGGCCGCCGCGGCCTGCGTCACCTGCCACGGCGCCGAT
GGCATGGGCCTGGCCGCCGCCGGCTTTCCGCGCCTGGCGGGCCTTCCCGCCGCCTACCTGAGCAAGCAGCTG
CACGACCTCAAGCAGGGCGGCAGTCGCGAGCACCCGGTGATGAAGGGCATAGCCGATGCTCTCGGCGACGAC
GAGATCCAGGCGCTCGCCACTACCCTCGCGGCAATGCCGGCGCCCAAGCCGGTGGAGCTGTCGCGCGTGGCC
ACCCCGCGCAGCCCCGGCGAGACCCTGGCGGTGCGTGGCGCCTGGGAGCGCAACATTCCCGAGTGCGTGACC
TGTCACGGTCCGGCCGGCAGCGGCGTGGGGGAGGCCTTCCCGCCGTTGCAGGGGCAGGGCGAGATGTACCTG
AGCAACCAGTTGCGCGCCTGGCAGCTTGGCACTCGCCGCAACGACCCGAACGATCTGATGGGACATATCGCC
AAATCCCTCAGCGAAGAGGAGATCCGCAGCGTCAGCCAGTTCTTCGCCACCCTCGGTCAGGCAGGAGGCCAG
CCATGA