ViewGene

Locus Name:
GeneID:
Location:

GeneID:3592
TrivialName: PA14_47750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47750
PAO1 Ortholog Locus:PA1274
Sequence Length:657
Protein Length:218
Start: 4248926
Stop: 4248270
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04663.1|AE004557_4 (AE004557) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 218/218 (100%), Positives = 218/218 (100%)
Sequence:
ATGTCCGATTCTTCCCACGCCTTCAGCGCCACGGAACGCGCCGCCGTCTACCGGGCCATCGCCGAGCGCCGC
GACATGCGCCACTTCAGCGGCGGCAGCGTGGCGCCGGAGCTGCTCGCGCGGCTGCTGGAGGCCGCACACCAG
GCGCCCAGCGTCGGCCTGATGCAACCCTGGCGCTTCATCCGTATCACCGAGCCGGCGTTGCGGCGGGCCATC
CACGGGCTGGTCGAGGAGGAACGCGGACGCACCGCCGAAGCCCTCGGCGAGCGCTCCGACGAGTTCATGCGG
CTCAAGGTCGAGGGCGTGCTGGATTGCGCCGAACTGCTGGTCGCCGCCCTGATGGACGACCGCGAACGCCAT
GTGTTCGGTCGCCGGACCCTGCCGCAGATGGACCTGGCGTCGCTCGCCTGCGCGATCCAGAACCTCTGGCTG
GCCAGTCGCGCCGAGGGCCTGGGGATGGGCTGGGTATCGCTGTTCGATCCGGCCGCGCTGGGCGAGTTGCTC
GGCCTGCCGCCCGGCAGCGAGGCGGTGGCGGTGCTCTGCCTGGGCCCGGTGGCGGAGTTCTACCCGGCGCCG
ATGCTGGCGCTGGAGGGTTGGAGCGAACCGCGTCCGCTGGCCGAGCTGGTCTACCAGAACCGTTGGGGCGAG
CGAGCATGA
Translation:
MSDSSHAFSATERAAVYRAIAERRDMRHFSGGSVAPELLARLLEAAHQAPSVGLMQPWRFIRITEPALRRAI
HGLVEEERGRTAEALGERSDEFMRLKVEGVLDCAELLVAALMDDRERHVFGRRTLPQMDLASLACAIQNLWL
ASRAEGLGMGWVSLFDPAALGELLGLPPGSEAVAVLCLGPVAEFYPAPMLALEGWSEPRPLAELVYQNRWGE
RA*
AnnotationID:3600GeneID:3592
AnnotatorUID: diggins
Modification Date/Time: 2005-05-25 21:09:24
Gene Name:
Confidence Code:3
GeneProduct:putative nitroreductase
Cell Localization:()
Synonyms:PA1274
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00881,COG0778
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55230.1| (AE016861) nitroreductase family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 216

 Score =  342 bits (877), Expect = 9e-94
 Identities = 163/212 (76%), Positives = 190/212 (89%)

>gb|AAN67295.1|AE016356_3 (AE016780) nitroreductase family protein [Pseudomonas putida
           KT2440]
          Length = 216

 Score =  341 bits (874), Expect = 2e-93
 Identities = 165/214 (77%), Positives = 185/214 (86%)

>emb|CAD17765.1| (AL646079) PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 216

 Score =  292 bits (747), Expect = 1e-78
 Identities = 141/211 (66%), Positives = 167/211 (79%)
Structural Features:
pfam00881, Nitroreductase, Nitroreductase family. 
Members of this family utilise FMN as a cofactor.
CD-Length = 176 residues,  99.4% aligned
Score =  104 bits (260), Expect = 1e-23
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

COG0778, NfnB, Nitroreductase [Energy production and conversion]
CD-Length = 207 residues, 100.0% aligne
Score = 96.6 bits (239), Expect = 2e-21
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 16/213 (7%)
Genomic Context:
Comment:
ReferenceID:7187
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24329
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37510
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3592_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3592

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5749 PA1274_tr translation of PA1274 218 99.99 99.99 0 1120.0
160467 gb|AAG04663.1|AE004557_4 (AE004557) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 218 99.99 99.99 0 1120.0
160469 gb|AAN67295.1|AE016356_3 (AE016780) nitroreductase family protein [Pseudomonas putida KT2440] 218 76.60 85.77 2 873.0
160468 gb|AAO55230.1| (AE016861) nitroreductase family protein [Pseudomonas syringae pv. tomato str. DC3000] 218 74.77 87.15 2 870.0
160470 emb|CAD17765.1| (AL646079) PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 218 64.67 76.60 2 739.0
GC ORFID: 46594How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1274Glimmer Score:
Start: 704983Stop: 705639
Length: 657
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1274 translation of PA1274Homolog Bit Score 436.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6470 (ORF: BLASTX 340.0), t_PA1274 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGATTCTTCCCACGCCTTCAGCGCCACGGAACGCGCCGCCGTCTACCGGGCCATCGCCGAGCGCCGC
GACATGCGCCACTTCAGCGGCGGCAGCGTGGCGCCGGAGCTGCTCGCGCGGCTGCTGGAGGCCGCACACCAG
GCGCCCAGCGTCGGCCTGATGCAACCCTGGCGCTTCATCCGTATCACCGAGCCGGCGTTGCGGCGGGCCATC
CACGGGCTGGTCGAGGAGGAACGCGGACGCACCGCCGAAGCCCTCGGCGAGCGCTCCGACGAGTTCATGCGG
CTCAAGGTCGAGGGCGTGCTGGATTGCGCCGAACTGCTGGTCGCCGCCCTGATGGACGACCGCGAACGCCAT
GTGTTCGGTCGCCGGACCCTGCCGCAGATGGACCTGGCGTCGCTCGCCTGCGCGATCCAGAACCTCTGGCTG
GCCAGTCGCGCCGAGGGCCTGGGGATGGGCTGGGTATCGCTGTTCGATCCGGCCGCGCTGGGCGAGTTGCTC
GGCCTGCCGCCCGGCAGCGAGGCGGTGGCGGTGCTCTGCCTGGGCCCGGTGGCGGAGTTCTACCCGGCGCCG
ATGCTGGCGCTGGAGGGTTGGAGCGAACCGCGTCCGCTGGCCGAGCTGGTCTACCAGAACCGTTGGGGCGAG
CGAGCATGA