ViewGene
Locus Name:
GeneID:
Location:

GeneID:3591
TrivialName: PA14_53620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53620
PAO1 Ortholog Locus:PA0826
Sequence Length:639
Protein Length:212
Start: 4756330
Stop: 4756968
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04215.1|AE004517_10 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/212 (98%), Positives = 211/212 (99%)
Sequence:
ATGAAAAAGGAACCGAAAGGAGCAAAAAACAGGATAGTCATCGCCAAAGATGAGAAGAACGTTCTGACCTGC
ACCAGCGAAGGGTTCGAATATACGCCAGACATCGTCAAGAACGTCTACGGAAAGAGCAGCCGACCCGCACTG
GAAGACTGGTTCCTGACGGAACTTGATTTCTTTCGCAGGTATTACCCGGGATACGAGATTTTCACCCTCGGC
TCCAGTTGTGTCTTCGGCGAAAAGTTCGTGAACTACCTGACCATCTGCGAATTCGACATAGACAGTACCTAC
GCCTTCGACTGTCTCAAGAAGGCCCTGAGGGAGTCCGACCAGGCCATTAGGCGGAAACTCTCCGCCATGTGG
AAATGGGACATAGCCGCCAGGAAGGACTGGAACATCGTCTTCATGGTTGGGCACATGGACTTCGCCTACTTC
CTCCAGCACAGGAAGGAGTTCCAGGGGGATGCCCATAAGCGCTTCATGAGTACATTCACCACGGCGGAGACG
AAAATCACCTCTCGCGACTACAAGGTCATGCATGACGGCGCGATCCTGCCCTTCGACGAAACGGCCCTGTCG
CCGGAAGACAGGTTCATTTTCGAGAACTATCAAAAGATAAAGTTCGAAACCACGCCACTATGA
Translation:
MKKEPKGAKNRIVIAKDEKNVLTCTSEGFEYTPDIVKNVYGKSSRPALEDWFLTELDFFRRYYPGYEIFTLG
SSCVFGEKFVNYLTICEFDIDSTYAFDCLKKALRESDQAIRRKLSAMWKWDIAARKDWNIVFMVGHMDFAYF
LQHRKEFQGDAHKRFMSTFTTAETKITSRDYKVMHDGAILPFDETALSPEDRFIFENYQKIKFETTPL*
AnnotationID:3599GeneID:3591
AnnotatorUID: danlee
Modification Date/Time: 2004-04-22 14:02:16
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0826
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24327




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3591
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5748
                           PA0826_tr
                           translation of PA0826
                           212
                           98.58
                           99.52
                           0
                           1122.0
     

     
     
160466
                           gb|AAG04215.1|AE004517_10
                           (AE004517) hypothetical protein PA0826 [Pseudomonas aeruginosa PAO1]
                           212
                           98.58
                           99.52
                           0
                           1122.0
     

     






      

          
GC ORFID: 46593How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0826Glimmer Score: 

          
Start: 197577Stop: 196939

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0826 translation of PA0826Homolog Bit Score 436.0

          
Other Homologs:  t_PA0826 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAAGGAACCGAAAGGAGCAAAAAACAGGATAGTCATCGCCAAAGATGAGAAGAACGTTCTGACCTGC 
ACCAGCGAAGGGTTCGAATATACGCCAGACATCGTCAAGAACGTCTACGGAAAGAGCAGCCGACCCGCACTG 
GAAGACTGGTTCCTGACGGAACTTGATTTCTTTCGCAGGTATTACCCGGGATACGAGATTTTCACCCTCGGC 
TCCAGTTGTGTCTTCGGCGAAAAGTTCGTGAACTACCTGACCATCTGCGAATTCGACATAGACAGTACCTAC 
GCCTTCGACTGTCTCAAGAAGGCCCTGAGGGAGTCCGACCAGGCCATTAGGCGGAAACTCTCCGCCATGTGG 
AAATGGGACATAGCCGCCAGGAAGGACTGGAACATCGTCTTCATGGTTGGGCACATGGACTTCGCCTACTTC 
CTCCAGCACAGGAAGGAGTTCCAGGGGGATGCCCATAAGCGCTTCATGAGTACATTCACCACGGCGGAGACG 
AAAATCACCTCTCGCGACTACAAGGTCATGCATGACGGCGCGATCCTGCCCTTCGACGAAACGGCCCTGTCG 
CCGGAAGACAGGTTCATTTTCGAGAACTATCAAAAGATAAAGTTCGAAACCACGCCACTATGA