ViewGene
Locus Name:
GeneID:
Location:

GeneID:3590
TrivialName: PA14_53910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53910
PAO1 Ortholog Locus:PA0798
Sequence Length:651
Protein Length:216
Start: 4781434
Stop: 4780784
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04187.1|AE004515_3 (AE004515) phospholipid methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 215/216 (99%), Positives = 215/216 (99%)
Sequence:
ATGCTTTCCCCTCCAGCCGCTGTGCCAGGAGAGAGTTTCGTGGGCATCTATGACCGTTACGTGTTGCCGCGC
CTGATCGACTTCGCCTGCGGCATGGGCGACGTGATGAAGCAGCGTTCGCTGCTGGTGCCGCGCGCCCATGGG
CGGGTGCTGGAGATCGGTCTGGGCACCGGGCTCAACCTGGGCTTCTACGACGCGGCGAAGGTGTCGGCGATC
GTCGGCGTCGACCCGGCCGCGCAAATGCAGGCGCTGGCCCGCGAGCGCGCGGCGCAAATCGGCATCCCGGTG
GAAATGGTCGCCCTCGAGCTTGGCGAGATTCGCGCCGAGGCGGAAAGCTTCGACACCATCGTCTGCACTTTC
ACCCTTTGCTCCATCGCCGCGCCGCTGCCGGCGCTGGGCGAGATGCGTCGGGTGCTGAAGCGTGGCGGCGAA
TTGCTGTTCTGCGAGCACGGGCGCGCGCCGGACGCCTCGGTGCTGGCCTGGCAACGGCGCCTGACGCCCTGG
TGGAAACCGCTGGCCGGCGGTTGTCACCTGGACCGCGACATGCCGGCCTTGCTGCGCGAGGCCGGCTTTCGC
ATCGACGAGCTGGAACAGGGCTACCTGCCCGGGCCGCGGCCGATGACCTACGTCTACCACGGCGTCGCGCGC
TGA
Translation:
MLSPPAAVPGESFVGIYDRYVLPRLIDFACGMGDVMKQRSLLVPRAHGRVLEIGLGTGLNLGFYDAAKVSAI
VGVDPAAQMQALARERAAQIGIPVEMVALELGEIRAEAESFDTIVCTFTLCSIAAPLPALGEMRRVLKRGGE
LLFCEHGRAPDASVLAWQRRLTPWWKPLAGGCHLDRDMPALLREAGFRIDELEQGYLPGPRPMTYVYHGVAR
*
AnnotationID:3598GeneID:3590
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 16:04:04
Gene Name:pmtA
Confidence Code:1
GeneProduct:phospholipid methyltransferase
Cell Localization:()
Synonyms:PA0798
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG4300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG4300, Predicted methyltransferase [General function prediction only]
       CD-Length = 252 residues,  82.9% aligned
       Score =  128 bits (323), Expect = 9e-31






   
Genomic Context:






   
Comment:


















    ReferenceID:7183




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24325




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3590
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5747
                           PA0798_tr
                           translation of PA0798
                           216
                           99.53
                           99.53
                           0
                           1121.0
     

     
     
160461
                           gb|AAG04187.1|AE004515_3
                           (AE004515) phospholipid methyltransferase [Pseudomonas aeruginosa PAO1]
                           216
                           99.53
                           99.53
                           0
                           1121.0
     

     
     
160462
                           gb|AAK25443.1|
                           (AE006007) conserved hypothetical protein [Caulobacter crescentus CB15]
                           219
                           44.29
                           60.73
                           8
                           506.0
     

     
     
160463
                           gb|AAK64807.1|
                           (AE007209) conserved hypothetical protein [Sinorhizobium meliloti]
                           218
                           41.74
                           60.09
                           17
                           450.0
     

     
     
160464
                           dbj|BAB49159.1|
                           (AP002998) probable methyltransferase [Mesorhizobium loti]
                           226
                           37.61
                           51.76
                           25
                           376.0
     

     






      

          
GC ORFID: 46592How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0798Glimmer Score: 

          
Start: 172473Stop: 173123

          
Length: 651


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0798 translation of PA0798Homolog Bit Score 436.0

          
Other Homologs:  t_PA0798 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTTCCCCTCCAGCCGCTGTGCCAGGAGAGAGTTTCGTGGGCATCTATGACCGTTACGTGTTGCCGCGC 
CTGATCGACTTCGCCTGCGGCATGGGCGACGTGATGAAGCAGCGTTCGCTGCTGGTGCCGCGCGCCCATGGG 
CGGGTGCTGGAGATCGGTCTGGGCACCGGGCTCAACCTGGGCTTCTACGACGCGGCGAAGGTGTCGGCGATC 
GTCGGCGTCGACCCGGCCGCGCAAATGCAGGCGCTGGCCCGCGAGCGCGCGGCGCAAATCGGCATCCCGGTG 
GAAATGGTCGCCCTCGAGCTTGGCGAGATTCGCGCCGAGGCGGAAAGCTTCGACACCATCGTCTGCACTTTC 
ACCCTTTGCTCCATCGCCGCGCCGCTGCCGGCGCTGGGCGAGATGCGTCGGGTGCTGAAGCGTGGCGGCGAA 
TTGCTGTTCTGCGAGCACGGGCGCGCGCCGGACGCCTCGGTGCTGGCCTGGCAACGGCGCCTGACGCCCTGG 
TGGAAACCGCTGGCCGGCGGTTGTCACCTGGACCGCGACATGCCGGCCTTGCTGCGCGAGGCCGGCTTTCGC 
ATCGACGAGCTGGAACAGGGCTACCTGCCCGGGCCGCGGCCGATGACCTACGTCTACCACGGCGTCGCGCGC 
TGA