ViewGene
Locus Name:
GeneID:
Location:

GeneID:359
TrivialName: PA14_44630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44630
PAO1 Ortholog Locus:PA1532
Sequence Length:2106
Protein Length:701
Start: 3973594
Stop: 3971489
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04921.1|AE004581_8 (AE004581) DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa PAO1]
Identities = 671/701 (95%), Positives = 671/701 (95%), Gaps = 20/701 (2%)
Sequence:
ATGAGTTATCAAGTTCTTGCGCGTAAATGGCGTCCCCGTTCCTTCCGTGAAATGGTCGGCCAGACCCATGTG
CTCAAGGCTCTGATCAACGCCCTGGACAACCAGCGGCTGCACCATGCCTACCTGTTCACCGGTACCCGCGGG
GTCGGCAAGACCACCATCGCGCGGATCCTGGCCAAGTGCCTGAACTGCGAGACCGGGGTCAGTTCCACGCCG
TGCGGCGAATGCTCGGTCTGTCGCGAAATCGACGAAGGCCGCTTCGTCGACCTGATCGAAGTGGACGCCGCG
AGCCGGACCAAGGTCGAGGATACCCGCGAGTTGCTCGACAACGTGCAGTACTCGCCGACCCGCGGCCGCTAC
AAGGTCTACCTGATCGACGAAGTGCACATGCTCTCGTCACACAGTTTCAATGCGCTGCTCAAGACCCTCGAG
GAGCCGCCGCCGCACGTCAAGTTCCTGCTGGCCACCACCGACCCGCAGAAGTTGCCGGTGACCATCCTCTCG
CGCTGCCTGCAGTTCTCCCTGAAGAACATGCCGCCGGAGCGGGTGGTCGAGCACCTGACCCACGTGCTCGGA
GCCGAGAACGTGCCCTTCGAGGATGACGCCCTGTGGTTGCTCGGGCGCGCCGCCGACGGCTCGATGCGTGAC
GCCATGAGCCTGACCGACCAGGCCATCGCCTTCGGCGAGGGCAAGGTGCTGGCCGCAGACGTGCGGGCGATG
CTCGGTACCCTCGATCACGGCCAGGTCTATGGCGTGCTCCAGGCCTTGCTGGAGGGCGATGCGCGCGCTCTG
CTCGAAGCGGTGCGCCACCTGGCCGAGCAGGGGCCGGACTGGGGCGGCGTGCTTGCCGAAATACTCAACGTG
CTGCACCGCGTCGCGATCGCCCAGGCCCTGCCGGAAGCGATCGACAATGGCCAGGGCGACCGCGAGCGGGTG
CTGGCCCTGGCCCAGGCGTTGCCGGCGGAAGACGTACAGTTCTATTACCAGATGGGCCTGATCGGCCGCCGC
GACCTGCCGCTGGCGCCCGATCCGCGTAGCGGCTTCGAGATGGTGTTGCTGCGGATGCTCGCGTTCCGCCCG
GCGGACGCCGACGGCGCGCCGAGGACGCCGCTAAAGGACCTGGGGATCAGCAAGGCCACGACTGATCCCGCC
AACTCCCCCGTGGCCGGCGCGGCCTCGCCTGCGCCGGTCGCTGCCGTTGCTGCCGCGCCTGTCGTGGCTGCG
CCCGTCGAAGCCCCGGCTGCCCCGGCGGCAGCGCCATCCGCGCCACCGGCGGCGGTCGAGGTGCGCGTCGCG
GAAGCGGTTGTCGAAGAGCCCGCCGCCGCGGCAGAGGTCGTCGACTTGCCCTGGGAAGAGCCGGCGCCGAGC
CTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAG
CCCGAGCCGCTAGCCGTGGAGGCTCCCTCGGCCCCTCCGGCAGTGGCGGTCGAGGCGGTGGTGGAAACCGTT
CTGGAAGCCCTGCCGGCTGCGTTGCCGGTAGCACCTGACGAGCAGGACGAGCAGGACGAGCAGGACGAGCAG
GACGACGAGCCACCGCCCGCGGACGACTACTACGAAGTCGACATGGATACCCTGGCCTACCTGGATGCCGCG
CCCGAGCCTGACGTGGTCGTGGTGGAGGAGCCGCTGCCGGCGGCGAAGCCGGCCACCGGCCTGGCCGCGGAG
TGGCTGGAGCTGTTCCCGCGGCTCGGCCTCGGCGGCCTGACCGCCAGCATCGCTGCCAACTGTACGCTGGTA
GCTGCCGACGACGACCAATGGCATCTGCATCTCGATCCGGGCCAGAGCGCGCTGTTCAACGCCACCCAGCAG
CGGCGGCTGAACGATGCGCTGAACCAGCACCTGGGGCGCACCCTCAAACTGGAGGTGACCCTGCAGAAGCCT
GAGCAGGAGACCCCGGCCCAGGCAGCGGCACGCCGGCGTGCCGAGCGCCAGCGGGCGGCCGAGGCATCGATC
GATGCCGACCCGTTGGTCCGGCAGTTGCGCGAGCAGTTCGCCGCGGTGGTCCGTGACGGTACCATCGAACCT
TTGGAAGCCAAGGCCTGA
Translation:
MSYQVLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVSSTP
CGECSVCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYSPTRGRYKVYLIDEVHMLSSHSFNALLKTLE
EPPPHVKFLLATTDPQKLPVTILSRCLQFSLKNMPPERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRD
AMSLTDQAIAFGEGKVLAADVRAMLGTLDHGQVYGVLQALLEGDARALLEAVRHLAEQGPDWGGVLAEILNV
LHRVAIAQALPEAIDNGQGDRERVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRSGFEMVLLRMLAFRP
ADADGAPRTPLKDLGISKATTDPANSPVAGAASPAPVAAVAAAPVVAAPVEAPAAPAAAPSAPPAAVEVRVA
EAVVEEPAAAAEVVDLPWEEPAPSLAAEPEPEPEPEPEPEPEPEPEPEPEPLAVEAPSAPPAVAVEAVVETV
LEALPAALPVAPDEQDEQDEQDEQDDEPPPADDYYEVDMDTLAYLDAAPEPDVVVVEEPLPAAKPATGLAAE
WLELFPRLGLGGLTASIAANCTLVAADDDQWHLHLDPGQSALFNATQQRRLNDALNQHLGRTLKLEVTLQKP
EQETPAQAAARRRAERQRAAEASIDADPLVRQLREQFAAVVRDGTIEPLEAKA*
AnnotationID:368GeneID:359
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 20:08:42
Gene Name:dnaX
Confidence Code:2
GeneProduct:DNA polymerase subunits gamma and tau
Cell Localization:()
Synonyms:dnaZX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2812
Secondary Functional Category(ies):
EC Number:2.7.7.7
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69849.1|AE016623_11 (AE016790) DNA polymerase III, gamma and tau subunits [Pseudomonas
           putida KT2440]
          Length = 691

 Score =  982 bits (2538), Expect = 0.0
 Identities = 523/714 (73%), Positives = 566/714 (79%), Gaps = 40/714 (5%)

>gb|AAO57116.1| (AE016869) DNA polymerase III, subunits gamma and tau [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 743

 Score =  978 bits (2527), Expect = 0.0
 Identities = 519/739 (70%), Positives = 575/739 (77%), Gaps = 42/739 (5%)








 
Structural Features:
COG2812, DnaX, DNA polymerase III, gamma/tau subunits 
[DNA replication, recombination, and repair]
CD-Length = 515 residues,  99.8% aligned
Score =  480 bits (1236), Expect = 2e-136
dentities = 217/519 (41%), Positives = 301/519 (57%), Gaps = 13/519 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:721




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17863




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36501




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:359_cdd.html


    		




 
URL:

















    ReferenceID:36568




  
Author/Investigator(s):
        Flower AM, McHenry CS.





  
Title:
        The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame.




  
PubMed:
        3534795


MedLine:
        




    
Source:
Nucleic Acids Res. 1986 Oct 24;14(20):8091-101.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3534795

















    ReferenceID:36569




  
Author/Investigator(s):
        Kodaira M, Biswas SB, Kornberg A.





  
Title:
        The dnaX gene encodes the DNA polymerase III holoenzyme tau subunit, precursor of the gamma subunit, the dnaZ gene product.




  
PubMed:
        6358801


MedLine:
        




    
Source:
Mol Gen Genet. 1983;192(1-2):80-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6358801









           
Homologs By Global Alignment 

           

       



     
Gene ID:359
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
603
                           PA1532_tr
                           translation of PA1532
                           701
                           95.72
                           95.72
                           20
                           3400.0
     

     
     
28258
                           gb|AAG04921.1|AE004581_8
                           (AE004581) DNA polymerase subunits gamma and tau [Pseudomonas aeruginosa PAO1]
                           701
                           95.72
                           95.72
                           20
                           3400.0
     

     
     
28259
                           gb|AAN69849.1|AE016623_11
                           (AE016790) DNA polymerase III, gamma and tau subunits [Pseudomonas putida KT2440]
                           722
                           73.54
                           79.63
                           52
                           2574.0
     

     
     
28260
                           gb|AAO57116.1|
                           (AE016869) DNA polymerase III, subunits gamma and tau [Pseudomonas syringae pv. tomato str. DC3000]
                           768
                           68.35
                           76.30
                           92
                           2570.0
     

     
     
28261
                           gb|AAQ59286.1|
                           (AE016915) DNA polymerase subunits gamma and tau [Chromobacterium violaceum ATCC 12472]
                           710
                           45.07
                           58.73
                           80
                           1451.0
     

     






      

          
GC ORFID: 43361How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1532Glimmer Score: 

          
Start: 980315Stop: 982420

          
Length: 2106


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1532 translation of PA1532Homolog Bit Score 1309.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene834 (ORF: BLASTX 975.0), t_PA1532 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTATCAAGTTCTTGCGCGTAAATGGCGTCCCCGTTCCTTCCGTGAAATGGTCGGCCAGACCCATGTG 
CTCAAGGCTCTGATCAACGCCCTGGACAACCAGCGGCTGCACCATGCCTACCTGTTCACCGGTACCCGCGGG 
GTCGGCAAGACCACCATCGCGCGGATCCTGGCCAAGTGCCTGAACTGCGAGACCGGGGTCAGTTCCACGCCG 
TGCGGCGAATGCTCGGTCTGTCGCGAAATCGACGAAGGCCGCTTCGTCGACCTGATCGAAGTGGACGCCGCG 
AGCCGGACCAAGGTCGAGGATACCCGCGAGTTGCTCGACAACGTGCAGTACTCGCCGACCCGCGGCCGCTAC 
AAGGTCTACCTGATCGACGAAGTGCACATGCTCTCGTCACACAGTTTCAATGCGCTGCTCAAGACCCTCGAG 
GAGCCGCCGCCGCACGTCAAGTTCCTGCTGGCCACCACCGACCCGCAGAAGTTGCCGGTGACCATCCTCTCG 
CGCTGCCTGCAGTTCTCCCTGAAGAACATGCCGCCGGAGCGGGTGGTCGAGCACCTGACCCACGTGCTCGGA 
GCCGAGAACGTGCCCTTCGAGGATGACGCCCTGTGGTTGCTCGGGCGCGCCGCCGACGGCTCGATGCGTGAC 
GCCATGAGCCTGACCGACCAGGCCATCGCCTTCGGCGAGGGCAAGGTGCTGGCCGCAGACGTGCGGGCGATG 
CTCGGTACCCTCGATCACGGCCAGGTCTATGGCGTGCTCCAGGCCTTGCTGGAGGGCGATGCGCGCGCTCTG 
CTCGAAGCGGTGCGCCACCTGGCCGAGCAGGGGCCGGACTGGGGCGGCGTGCTTGCCGAAATACTCAACGTG 
CTGCACCGCGTCGCGATCGCCCAGGCCCTGCCGGAAGCGATCGACAATGGCCAGGGCGACCGCGAGCGGGTG 
CTGGCCCTGGCCCAGGCGTTGCCGGCGGAAGACGTACAGTTCTATTACCAGATGGGCCTGATCGGCCGCCGC 
GACCTGCCGCTGGCGCCCGATCCGCGTAGCGGCTTCGAGATGGTGTTGCTGCGGATGCTCGCGTTCCGCCCG 
GCGGACGCCGACGGCGCGCCGAGGACGCCGCTAAAGGACCTGGGGATCAGCAAGGCCACGACTGATCCCGCC 
AACTCCCCCGTGGCCGGCGCGGCCTCGCCTGCGCCGGTCGCTGCCGTTGCTGCCGCGCCTGTCGTGGCTGCG 
CCCGTCGAAGCCCCGGCTGCCCCGGCGGCAGCGCCATCCGCGCCACCGGCGGCGGTCGAGGTGCGCGTCGCG 
GAAGCGGTTGTCGAAGAGCCCGCCGCCGCGGCAGAGGTCGTCGACTTGCCCTGGGAAGAGCCGGCGCCGAGC 
CTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAG 
CCCGAGCCGCTAGCCGTGGAGGCTCCCTCGGCCCCTCCGGCAGTGGCGGTCGAGGCGGTGGTGGAAACCGTT 
CTGGAAGCCCTGCCGGCTGCGTTGCCGGTAGCACCTGACGAGCAGGACGAGCAGGACGAGCAGGACGAGCAG 
GACGACGAGCCACCGCCCGCGGACGACTACTACGAAGTCGACATGGATACCCTGGCCTACCTGGATGCCGCG 
CCCGAGCCTGACGTGGTCGTGGTGGAGGAGCCGCTGCCGGCGGCGAAGCCGGCCACCGGCCTGGCCGCGGAG 
TGGCTGGAGCTGTTCCCGCGGCTCGGCCTCGGCGGCCTGACCGCCAGCATCGCTGCCAACTGTACGCTGGTA 
GCTGCCGACGACGACCAATGGCATCTGCATCTCGATCCGGGCCAGAGCGCGCTGTTCAACGCCACCCAGCAG 
CGGCGGCTGAACGATGCGCTGAACCAGCACCTGGGGCGCACCCTCAAACTGGAGGTGACCCTGCAGAAGCCT 
GAGCAGGAGACCCCGGCCCAGGCAGCGGCACGCCGGCGTGCCGAGCGCCAGCGGGCGGCCGAGGCATCGATC 
GATGCCGACCCGTTGGTCCGGCAGTTGCGCGAGCAGTTCGCCGCGGTGGTCCGTGACGGTACCATCGAACCT 
TTGGAAGCCAAGGCCTGA