ViewGene
Locus Name:
GeneID:
Location:

GeneID:3588
TrivialName: PA14_48780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48780
PAO1 Ortholog Locus:PA1200
Sequence Length:663
Protein Length:220
Start: 4337537
Stop: 4336875
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04589.1|AE004550_5 (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 220/220 (100%), Positives = 220/220 (100%)
Sequence:
ATGACCACCCGCACCCTCAACCtcgACGACAACCTCTACCGCTACCTGCTGGACGTTTCGCTGCGGGAAACC
CCGCTGATGACCCGCCTGCGCGAGGAAACCGCGAAGCTGCCCAACGCGCGCTGGCAGATCGCCCCCGAGCAG
GGCCAGTTCATCGCCTTGCTGCTGACCCTGATCGGTGCGCGGCGGGCGCTGGAGGTCGGCACCTTCACCGGC
TACAGCGCCCTGTGCATGGCTACCGCCCTTGGCGAGCAGGGGCGCCTTACCTGTTGCGACCTGCCCGGCGAC
TACCATCTCACCGCGCGCCGCTACTGGCGCGAAGCCGCTGTCGAGGAGCGCATCGAGCTGCGCCTCGGGCCC
GCCCTGGAAACCCTGCGTGCGTTGCTCGACGAAGGTCTGGCCGGGCAATTCGACCTGGCCTTCATCGACGCC
GACAAGGCCAACTACCCCGAATACCTGGAGGCCGCGCTGGCGCTGGTGCGCCAGGGTGGGCTGGTGCTTTTC
GACAACGTGCTGTGGAGCGGCCGGGTGCTCGAAGCGCAGCCGAAGAGTGCGGATACCCGCGGCATCCAGCAG
CTCAACCTGGCGCTGAAGAACGACGCGCGGGTGGACTACTCGCTGCTGCCGATCGGCGACGGGCTGAGCGTC
TGCCGCAAGCGCTGA
Translation:
MTTRTLNLDDNLYRYLLDVSLRETPLMTRLREETAKLPNARWQIAPEQGQFIALLLTLIGARRALEVGTFTG
YSALCMATALGEQGRLTCCDLPGDYHLTARRYWREAAVEERIELRLGPALETLRALLDEGLAGQFDLAFIDA
DKANYPEYLEAALALVRQGGLVLFDNVLWSGRVLEAQPKSADTRGIQQLNLALKNDARVDYSLLPIGDGLSV
CRKR*
AnnotationID:3596GeneID:3588
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 16:04:51
Gene Name:
Confidence Code:3
GeneProduct:putative O-methyltransferase
Cell Localization:()
Synonyms:PA1200
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01596,COG4122
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB76878.1| (AP003599) O-methyltransferase [Nostoc sp. PCC 7120]
          Length = 220

 Score =  232 bits (591), Expect = 1e-60
 Identities = 117/219 (53%), Positives = 155/219 (70%)

>gb|AAC44130.1| (U24657) putative O-methyltransferase [Myxococcus xanthus]
          Length = 220

 Score =  209 bits (531), Expect = 1e-53
 Identities = 109/216 (50%), Positives = 145/216 (67%), Gaps = 1/216 (0%)

>dbj|BAA10567.1| (D64004) O-methyltransferase [Synechocystis sp. PCC 6803]
          Length = 220

 Score =  204 bits (520), Expect = 2e-52
 Identities = 102/212 (48%), Positives = 139/212 (65%)






 
Structural Features:
pfam01596, Methyltransf_3, O-methyltransferase.
CD-Length = 204 residues, 100.0% aligned
Score =  232 bits (593), Expect = 5e-62
Identities = 92/204 (45%), Positives = 141/204 (69%)

COG4122, COG4122, Predicted O-methyltransferase.
CD-Length = 219 residues,  99.5% aligned
Score =  213 bits (544), Expect = 3e-56
Identities = 103/222 (46%), Positives = 130/222 (58%), Gaps = 6/222 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24321




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38046




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3588_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3588
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5745
                           PA1200_tr
                           translation of PA1200
                           220
                           99.99
                           99.99
                           0
                           1124.0
     

     
     
160346
                           gb|AAG04589.1|AE004550_5
                           (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           220
                           99.99
                           99.99
                           0
                           1124.0
     

     
     
160347
                           dbj|BAB76878.1|
                           (AP003599) O-methyltransferase [Nostoc sp. PCC 7120]
                           220
                           53.18
                           70.45
                           0
                           591.0
     

     
     
160348
                           gb|AAQ57785.1|
                           (AE016910) probable O-methyltransferase [Chromobacterium violaceum ATCC 12472]
                           223
                           52.46
                           64.57
                           5
                           549.0
     

     
     
160350
                           gb|AAC44130.1|
                           (U24657) putative O-methyltransferase [Myxococcus xanthus]
                           223
                           49.77
                           65.02
                           6
                           532.0
     

     






      

          
GC ORFID: 46590How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1200Glimmer Score: 

          
Start: 616371Stop: 617033

          
Length: 663


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1200 translation of PA1200Homolog Bit Score 437.0

          
Other Homologs:  t_PA1200 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCCGCACCCTCAACCtcgACGACAACCTCTACCGCTACCTGCTGGACGTTTCGCTGCGGGAAACC 
CCGCTGATGACCCGCCTGCGCGAGGAAACCGCGAAGCTGCCCAACGCGCGCTGGCAGATCGCCCCCGAGCAG 
GGCCAGTTCATCGCCTTGCTGCTGACCCTGATCGGTGCGCGGCGGGCGCTGGAGGTCGGCACCTTCACCGGC 
TACAGCGCCCTGTGCATGGCTACCGCCCTTGGCGAGCAGGGGCGCCTTACCTGTTGCGACCTGCCCGGCGAC 
TACCATCTCACCGCGCGCCGCTACTGGCGCGAAGCCGCTGTCGAGGAGCGCATCGAGCTGCGCCTCGGGCCC 
GCCCTGGAAACCCTGCGTGCGTTGCTCGACGAAGGTCTGGCCGGGCAATTCGACCTGGCCTTCATCGACGCC 
GACAAGGCCAACTACCCCGAATACCTGGAGGCCGCGCTGGCGCTGGTGCGCCAGGGTGGGCTGGTGCTTTTC 
GACAACGTGCTGTGGAGCGGCCGGGTGCTCGAAGCGCAGCCGAAGAGTGCGGATACCCGCGGCATCCAGCAG 
CTCAACCTGGCGCTGAAGAACGACGCGCGGGTGGACTACTCGCTGCTGCCGATCGGCGACGGGCTGAGCGTC 
TGCCGCAAGCGCTGA