ViewGene
Locus Name:
GeneID:
Location:

GeneID:3587
TrivialName: PA14_49620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49620
PAO1 Ortholog Locus:PA1143
Sequence Length:654
Protein Length:217
Start: 4415184
Stop: 4415837
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04532.1|AE004544_4 (AE004544) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 214/217 (98%), Positives = 217/217 (100%)
Sequence:
ATGCCACTTGCCCTCTTCGACCTCGACGACACCCTGATCGACGGCGACTGCGCGACCCTCTGGGGGCGCTAC
ATGACCGAACTGGGCTGGGTCGAGAAAACCGCCTTCCTGCACCAGGAACGCCGCCTCATGGAACTCTATGCC
GAGGGCCGGCTGGCCATGGAGGACTACATGGACTTCAGCCTGGCGCCCATCGCCGGCCGCACCCCGGCGGAA
ATCGCCGGCGCCGTCGAGGATTTCGTCGCGCGGATCGTTGCGCCGCGCATCCACGCCGACGCCGTGCGCTGC
CTGGAACGCCACCGCCAGGCCGGCGACCGCCTGCTGATCATCTCCGCCTCGGCGCACTTCCTGGTCAGCGCC
ATCGGCCGCCGGCTGGGGGTGGACGAGGTGCTGGCGATCGACATCGAGGAGCGCGACGGCCTCTACACCGGG
CGCACCCGCGGCACCCTCACCTACCGCGAGGGCAAGGTCCGTCGCCTCGACGCCTGGCTGGCCCAGGAGGGC
GAGACGCTGGCCGGCGCGACCTTCTATTCCGACTCGCGCAACGACCTGCCGCTGCTCTCGCGGGTCGACCGG
CCGCACACGGTGAACCCCGACCCGGCGCTGCTCGGGCACGCCCGCGAGGCCGGCTGGCCGGTGCTGGAATGG
CGCTGA
Translation:
MPLALFDLDDTLIDGDCATLWGRYMTELGWVEKTAFLHQERRLMELYAEGRLAMEDYMDFSLAPIAGRTPAE
IAGAVEDFVARIVAPRIHADAVRCLERHRQAGDRLLIISASAHFLVSAIGRRLGVDEVLAIDIEERDGLYTG
RTRGTLTYREGKVRRLDAWLAQEGETLAGATFYSDSRNDLPLLSRVDRPHTVNPDPALLGHAREAGWPVLEW
R*
AnnotationID:3595GeneID:3587
AnnotatorUID: danlee
Modification Date/Time: 2004-09-13 13:01:03
Gene Name:
Confidence Code:3
GeneProduct:Possible phosphoserine phosphatase
Cell Localization:()
Synonyms:PA1143
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0560
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism]
     CD-Length = 212 residues,  93.4% aligned
     Score =  150 bits (380), Expect = 1e-37






   
Genomic Context:






   
Comment:


















    ReferenceID:7177




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24319




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3587
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5742
                           PA1143_tr
                           translation of PA1143
                           217
                           98.61
                           99.99
                           0
                           1125.0
     

     
     
160332
                           gb|AAG04532.1|AE004544_4
                           (AE004544) hypothetical protein PA1143 [Pseudomonas aeruginosa PAO1]
                           217
                           98.61
                           99.99
                           0
                           1125.0
     

     
     
160333
                           gb|AAN67342.1|AE016360_8
                           (AE016780) hydrolase, haloacid dehalogenase-like family [Pseudomonas putida KT2440]
                           217
                           58.98
                           68.66
                           0
                           663.0
     

     
     
160335
                           gb|AAG06643.1|AE004748_1
                           (AE004748) hypothetical protein PA3255 [Pseudomonas aeruginosa PAO1]
                           217
                           50.69
                           63.13
                           25
                           552.0
     

     
     
5743
                           PA3255_tr
                           translation of PA3255
                           217
                           50.69
                           63.13
                           25
                           552.0
     

     






      

          
GC ORFID: 46589How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1143Glimmer Score: 

          
Start: 538724Stop: 538071

          
Length: 654


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1143 translation of PA1143Homolog Bit Score 437.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2681 (ORF: BLASTX 268.0), t_PA3255 (ORF: BLASTX 216.0), t_PA0335 (ORF: BLASTX 162.0), t_PA1143 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCACTTGCCCTCTTCGACCTCGACGACACCCTGATCGACGGCGACTGCGCGACCCTCTGGGGGCGCTAC 
ATGACCGAACTGGGCTGGGTCGAGAAAACCGCCTTCCTGCACCAGGAACGCCGCCTCATGGAACTCTATGCC 
GAGGGCCGGCTGGCCATGGAGGACTACATGGACTTCAGCCTGGCGCCCATCGCCGGCCGCACCCCGGCGGAA 
ATCGCCGGCGCCGTCGAGGATTTCGTCGCGCGGATCGTTGCGCCGCGCATCCACGCCGACGCCGTGCGCTGC 
CTGGAACGCCACCGCCAGGCCGGCGACCGCCTGCTGATCATCTCCGCCTCGGCGCACTTCCTGGTCAGCGCC 
ATCGGCCGCCGGCTGGGGGTGGACGAGGTGCTGGCGATCGACATCGAGGAGCGCGACGGCCTCTACACCGGG 
CGCACCCGCGGCACCCTCACCTACCGCGAGGGCAAGGTCCGTCGCCTCGACGCCTGGCTGGCCCAGGAGGGC 
GAGACGCTGGCCGGCGCGACCTTCTATTCCGACTCGCGCAACGACCTGCCGCTGCTCTCGCGGGTCGACCGG 
CCGCACACGGTGAACCCCGACCCGGCGCTGCTCGGGCACGCCCGCGAGGCCGGCTGGCCGGTGCTGGAATGG 
CGCTGA