ViewGene
Locus Name:
GeneID:
Location:

GeneID:3586
TrivialName: PA14_05070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05070
PAO1 Ortholog Locus:PA0389
Sequence Length:621
Protein Length:206
Start: 445358
Stop: 444738
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03778.1|AE004476_8 (AE004476) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/206 (100%), Positives = 206/206 (100%)
Sequence:
ATGCGCGCCGATCTTGAAATCATCCAGGAATGGATTCCCGCCGGCAGCCGCGTCCTCGACCTCGGCTGCGGC
GACGGCGAACTCCTGGCCTGGCTGCGCGACCACAAGCAGGTCAGCGGCTACGGCCTGGAGATCGACCCCGAC
AACATCGCCCGTTGCATCGAAAACGGGGTGAACGTGATCGAGCAGGACCTCGACAAGGGCCTGGGCAACTTC
GCCAGCGACAGCTTCGACGTGGTGGTGATGACCCAGGCGCTACAGGCCGTGCACTATCCGGACAAGATCCTC
GAAGAGATGCTGCGGGTCGGCAAGACCTGCATCATCACCTTCCCCAACTTCGGCCACTGGCGCTGCCGCTGG
TACCTGGCGCGCAACGGCCGGATGCCGGTCTCCGAGTTCCTGCCGTATACCTGGTACAACACGCCGAACATC
CATTTCTGCACCTTCCAGGACTTCGAGCGCCTGTGCCGCCAGTTGCGCATGCGCGTGCTCGACCGCCTGGCC
GTAGACCGTGACCACCGGCATGGCTGGGCCAGCCGGCTGTGGCCTAATCTATTGGGTGAGATTGGAATCTAC
CGGGTCACCGGACCCGGAGTGCAGACCCGCAACCTCGCCGTCTAG
Translation:
MRADLEIIQEWIPAGSRVLDLGCGDGELLAWLRDHKQVSGYGLEIDPDNIARCIENGVNVIEQDLDKGLGNF
ASDSFDVVVMTQALQAVHYPDKILEEMLRVGKTCIITFPNFGHWRCRWYLARNGRMPVSEFLPYTWYNTPNI
HFCTFQDFERLCRQLRMRVLDRLAVDRDHRHGWASRLWPNLLGEIGIYRVTGPGVQTRNLAV*
AnnotationID:3594GeneID:3586
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:53
Gene Name:
Confidence Code:3
GeneProduct:putative methionine biosynthesis protein
Cell Localization:()
Synonyms:metW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07021
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58478.1| (AE016874) metW protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 206

 Score =  373 bits (957), Expect = e-103
 Identities = 170/206 (82%), Positives = 185/206 (89%)

>gb|AAN70663.1|AE016710_8 (AE016793) methionine biosynthesis protein [Pseudomonas putida
           KT2440]
          Length = 212

 Score =  355 bits (911), Expect = 1e-97
 Identities = 165/206 (80%), Positives = 180/206 (87%)








 
Structural Features:
pfam07021, MetW, Methionine biosynthesis protein MetW
CD-Length = 193 residues, 100.0% aligned
Score =  307 bits (789), Expect = 5e-85
Identities = 113/193 (58%), Positives = 146/193 (75%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7175




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24317




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33726




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3586_cdd.html


    		




 
URL:

















    ReferenceID:35387




  
Author/Investigator(s):
        Andersen GL, Beattie GA, Lindow SE.





  
Title:
        Molecular characterization and sequence of a methionine biosynthetic locus from Pseudomonas syringae.




  
PubMed:
        9721288


MedLine:
        




    
Source:
J Bacteriol. 1998 Sep;180(17):4497-507.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9721288









           
Homologs By Global Alignment 

           

       



     
Gene ID:3586
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5741
                           PA0389_tr
                           translation of PA0389
                           206
                           99.99
                           99.99
                           0
                           1127.0
     

     
     
160315
                           gb|AAG03778.1|AE004476_8
                           (AE004476) hypothetical protein PA0389 [Pseudomonas aeruginosa PAO1]
                           206
                           99.99
                           99.99
                           0
                           1127.0
     

     
     
160316
                           gb|AAO58478.1|
                           (AE016874) metW protein [Pseudomonas syringae pv. tomato str. DC3000]
                           206
                           82.52
                           89.80
                           0
                           957.0
     

     
     
160318
                           gb|AAK29459.1|AF363274_1
                           (AF363274) MetW [Pseudomonas putida]
                           206
                           80.09
                           87.37
                           0
                           911.0
     

     
     
160317
                           gb|AAN70663.1|AE016710_8
                           (AE016793) methionine biosynthesis protein [Pseudomonas putida KT2440]
                           212
                           77.83
                           84.90
                           6
                           911.0
     

     






      

          
GC ORFID: 46588How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0389Glimmer Score: 

          
Start: 6246700Stop: 6246080

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0389 translation of PA0389Homolog Bit Score 438.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3722 (ORF: BLASTX 374.0), t_PA0389 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCCGATCTTGAAATCATCCAGGAATGGATTCCCGCCGGCAGCCGCGTCCTCGACCTCGGCTGCGGC 
GACGGCGAACTCCTGGCCTGGCTGCGCGACCACAAGCAGGTCAGCGGCTACGGCCTGGAGATCGACCCCGAC 
AACATCGCCCGTTGCATCGAAAACGGGGTGAACGTGATCGAGCAGGACCTCGACAAGGGCCTGGGCAACTTC 
GCCAGCGACAGCTTCGACGTGGTGGTGATGACCCAGGCGCTACAGGCCGTGCACTATCCGGACAAGATCCTC 
GAAGAGATGCTGCGGGTCGGCAAGACCTGCATCATCACCTTCCCCAACTTCGGCCACTGGCGCTGCCGCTGG 
TACCTGGCGCGCAACGGCCGGATGCCGGTCTCCGAGTTCCTGCCGTATACCTGGTACAACACGCCGAACATC 
CATTTCTGCACCTTCCAGGACTTCGAGCGCCTGTGCCGCCAGTTGCGCATGCGCGTGCTCGACCGCCTGGCC 
GTAGACCGTGACCACCGGCATGGCTGGGCCAGCCGGCTGTGGCCTAATCTATTGGGTGAGATTGGAATCTAC 
CGGGTCACCGGACCCGGAGTGCAGACCCGCAACCTCGCCGTCTAG