ViewGene
Locus Name:
GeneID:
Location:

GeneID:3585
TrivialName: PA14_70230
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70230
PAO1 Ortholog Locus:PA5319
Sequence Length:675
Protein Length:224
Start: 6262242
Stop: 6261568
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08704.1|AE004944_8 (AE004944) DNA repair protein RadC [Pseudomonas aeruginosa PAO1]
Identities = 223/224 (99%), Positives = 224/224 (100%) with radC (PA5319) of PAO1.
Sequence:
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTT
TCCGATGCCGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGG
CGGCTGTTGAGCGAGTTCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTC
GGGCTCGGCGTGGCCAAGTATGCGCAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGC
CTGCGTCGCGATTCGATACTGGAGAGCCCGCAGGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAG
CAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGCACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAG
GGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGCACCCTGGCGCACAACGCGGCGGCG
CTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCGCCAGCTCACTGCGCGC
CTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCGAGCCGCTG
TCGCTGGCCGAATACGGTTGGCTGTGA
Translation:
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHL
GLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQ
GSIDGASVYPRQVVKRTLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPL
SLAEYGWL*
AnnotationID:3593GeneID:3585
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 11:11:15
Gene Name:radC
Confidence Code:2
GeneProduct:DNA repair protein RadC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2003
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323975|ref|ZP_00972040.1|  COG2003: DNA repair proteins [Pseudomonas aeruginosa 2192]
Length=224

 Score =  439 bits (1129),  Expect = 4e-122
 Identities = 224/224 (100%), Positives = 224/224 (100%), Gaps = 0/224 (0%)

gi|15600512|ref|NP_254006.1|  DNA repair protein RadC [Pseudomonas aeruginosa PAO1]
 gi|11348454|pir||A82982  DNA repair protein RadC PA5319 [imported] - Pseudomonas aeruginosa 
(strain PAO1)
 gi|13431808|sp|Q9HTN5|RADC_PSEAE  DNA repair protein radC homolog
Length=224

 Score =  438 bits (1126),  Expect = 8e-122
 Identities = 223/224 (99%), Positives = 224/224 (100%), Gaps = 0/224 (0%)

gi|84317985|ref|ZP_00966419.1|  COG2003: DNA repair proteins [Pseudomonas aeruginosa C3719]
Length=224

 Score =  437 bits (1124),  Expect = 1e-121
 Identities = 223/224 (99%), Positives = 223/224 (99%), Gaps = 0/224 (0%)






 
Structural Features:
COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair].
             CD-Length = 224 residues, 100.0% aligned
             Score =  287 bits (736), Expect = 8e-79






   
Genomic Context:






   
Comment:


















    ReferenceID:7173




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24315




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3585
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5740
                           PA5319_tr
                           translation of PA5319
                           224
                           99.55
                           99.99
                           0
                           1126.0
     

     
     
160222
                           gb|AAG08704.1|AE004944_8
                           (AE004944) DNA repair protein RadC [Pseudomonas aeruginosa PAO1]
                           224
                           99.55
                           99.99
                           0
                           1126.0
     

     
     
160223
                           gb|AAO53640.1|
                           (AE016856) DNA repair protein RadC [Pseudomonas syringae pv. tomato str. DC3000]
                           224
                           70.08
                           83.03
                           0
                           803.0
     

     
     
160224
                           gb|AAN70849.1|AE016729_7
                           (AE016793) DNA repair protein RadC [Pseudomonas putida KT2440]
                           226
                           66.81
                           79.64
                           2
                           783.0
     

     
     
160225
                           emb|CAD85375.1|
                           (BX321861) DNA repair protein radC family [Nitrosomonas europaea ATCC 19718]
                           224
                           62.05
                           75.89
                           0
                           691.0
     

     






      

          
GC ORFID: 46587How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5319Glimmer Score: 

          
Start: 5525931Stop: 5525257

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5319 translation of PA5319Homolog Bit Score 438.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3147 (ORF: BLASTX 310.0), t_PA5319 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTT 
TCCGATGCCGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGG 
CGGCTGTTGAGCGAGTTCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTC 
GGGCTCGGCGTGGCCAAGTATGCGCAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGC 
CTGCGTCGCGATTCGATACTGGAGAGCCCGCAGGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAG 
CAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGCACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAG 
GGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGCACCCTGGCGCACAACGCGGCGGCG 
CTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCGCCAGCTCACTGCGCGC 
CTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCGAGCCGCTG 
TCGCTGGCCGAATACGGTTGGCTGTGA