ViewGene

Locus Name:
GeneID:
Location:

GeneID:3584
TrivialName: PA14_12120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12120
PAO1 Ortholog Locus:PA3997
Sequence Length:654
Protein Length:217
Start: 1047620
Stop: 1048273
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07384.1|AE004817_8 (AE004817) lipoate-protein ligase B [Pseudomonas aeruginosa PAO1]
Identities = 217/217 (100%), Positives = 217/217 (100%)
Sequence:
ATGGGACTCGAGCTGGGCTTCCGTGAGCTCGGCGAGGTTCCCTACGAACCGACCTGGCATGCCATGCAGCGC
TTCGTTGCCGAACGCGACAAATCGGTAATGGACGAAGCCTGGCTGTTGCAGCACCCTGCAGTCTTCACCCAG
GGGCAGGCCGGCAAGGCGGAGCATGTGCTGTTCCCCGGCGACATCCCGGTGATCCAGGTGGATCGCGGCGGC
CAGGTGACCTACCACGGCCCCGGCCAGTTGGTCACCTACCTGCTGCTCGATGTCCGCCGCCTGGGACTGGGC
GTGCGCGAGCTGGTCAGCCGGATCGAGCAGAGCCTGATCGGCCTGCTGGCGTCCTATGACGTGCAGGCCGTG
GCCAAGCCGGACGCGCCGGGTGTCTACGTCGACGGGGCGAAGATCGCCTCCCTCGGCCTGCGCATCCGCAAC
GGCTGTTCCTTCCATGGCCTGGCGCTGAACCTGGACATGGACCTGCGACCGTTCCAACGAATCAATCCCTGC
GGCTACGCCGGGATGCCCATGACCCAACTGCGCGACCTGGTTGGGCCGGTGGATTTTGCCGAGGTGTGTACC
CGATTGCGCGCTGAGCTCGTCTCACGCCTTGGCTACGCTGAACAGAAGACCCTTACGGGCGGGATCGAACTG
ACATGA
Translation:
MGLELGFRELGEVPYEPTWHAMQRFVAERDKSVMDEAWLLQHPAVFTQGQAGKAEHVLFPGDIPVIQVDRGG
QVTYHGPGQLVTYLLLDVRRLGLGVRELVSRIEQSLIGLLASYDVQAVAKPDAPGVYVDGAKIASLGLRIRN
GCSFHGLALNLDMDLRPFQRINPCGYAGMPMTQLRDLVGPVDFAEVCTRLRAELVSRLGYAEQKTLTGGIEL
T*
AnnotationID:3592GeneID:3584
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 16:04:58
Gene Name:lipB
Confidence Code:2
GeneProduct:lipoate-protein ligase B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0321,KOG0325,pfam03099
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|10195 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism]
Length = 221
Score =  287 bits (737), Expect = 1e-78
Identities = 112/206 (54%), Positives = 138/206 (66%), Gaps = 2/206 (0%)
Genomic Context:
Comment:
ReferenceID:7171
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24313
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34107
Author/Investigator(s): Oshima-Hirayama N, Yoshikawa K, Nishioka T, Oda J.
Title: Lipase from Pseudomonas aeruginosa. Production in Escherichia coli and activation in vitro with a protein from the downstream gene.
PubMed: 8344292
MedLine:
Source:
Eur J Biochem. 1993 Jul 15;215(2):239-46.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8344292
Homologs By Global Alignment
Gene ID:3584

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5739 PA3997_tr translation of PA3997 217 99.99 99.99 0 1127.0
160173 gb|AAG07384.1|AE004817_8 (AE004817) lipoate-protein ligase B [Pseudomonas aeruginosa PAO1] 217 99.99 99.99 0 1127.0
160174 gb|AAD32236.1|AF147448_7 (AF147448) lipoate biosynthesis protein B [Pseudomonas aeruginosa] 217 90.32 90.32 21 1008.0
160175 gb|AAN70370.1|AE016679_2 (AE016792) lipoate-protein ligase B [Pseudomonas putida KT2440] 218 75.68 82.11 3 848.0
160176 gb|AAO58248.1| (AE016873) lipoate-protein ligase B [Pseudomonas syringae pv. tomato str. DC3000] 218 72.01 80.73 1 829.0
GC ORFID: 46586How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3997Glimmer Score:
Start: 3906318Stop: 3905665
Length: 654
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3997 translation of PA3997Homolog Bit Score 438.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5333 (ORF: BLASTX 328.0), t_PA3997 (ORF: GLIMMER)
GC ORF Sequence
ATGGGACTCGAGCTGGGCTTCCGTGAGCTCGGCGAGGTTCCCTACGAACCGACCTGGCATGCCATGCAGCGC
TTCGTTGCCGAACGCGACAAATCGGTAATGGACGAAGCCTGGCTGTTGCAGCACCCTGCAGTCTTCACCCAG
GGGCAGGCCGGCAAGGCGGAGCATGTGCTGTTCCCCGGCGACATCCCGGTGATCCAGGTGGATCGCGGCGGC
CAGGTGACCTACCACGGCCCCGGCCAGTTGGTCACCTACCTGCTGCTCGATGTCCGCCGCCTGGGACTGGGC
GTGCGCGAGCTGGTCAGCCGGATCGAGCAGAGCCTGATCGGCCTGCTGGCGTCCTATGACGTGCAGGCCGTG
GCCAAGCCGGACGCGCCGGGTGTCTACGTCGACGGGGCGAAGATCGCCTCCCTCGGCCTGCGCATCCGCAAC
GGCTGTTCCTTCCATGGCCTGGCGCTGAACCTGGACATGGACCTGCGACCGTTCCAACGAATCAATCCCTGC
GGCTACGCCGGGATGCCCATGACCCAACTGCGCGACCTGGTTGGGCCGGTGGATTTTGCCGAGGTGTGTACC
CGATTGCGCGCTGAGCTCGTCTCACGCCTTGGCTACGCTGAACAGAAGACCCTTACGGGCGGGATCGAACTG
ACATGA