ViewGene
Locus Name:
GeneID:
Location:

GeneID:3583
TrivialName: PA14_27810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27810
PAO1 Ortholog Locus:PA2809
Sequence Length:681
Protein Length:226
Start: 2411553
Stop: 2410873
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06197.1|AE004708_3 (AE004708) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 225/226 (99%), Positives = 226/226 (100%)
Sequence:
ATGAAACTGCTGATCGTCGAAGACGAACCGCGCATCGGCCAGTACCTGCGCCAGGGGCTCGCCGAGGCAGGC
TTCGCCGTCGACCTGAGCGACGATGGCAACGAGGGCGAGCAACTGGCCCTGGGCGGCGACTACGACCTGCTG
ATCCTCGACGTCATGCTGCCCGGCCGTGACGGCTGGCAGATCCTGCGCAGCGTGCGCGACGCCGGGATGACC
ATACCGGTGCTGTTCCTGACCGCCCGCGATGCCGTAGAGGACCGCGTGCGCGGCCTCGAACAAGGCGCCGAC
GATTACCTGGTGAAGCCGTTCGCCTTCGTCGAACTGCTCGCCCGGGTGCGCACCCTGCTGCGCCGGGGCAGC
CAGCAGTTGCAGGAGACCACCCTGCAACTGGCCGACCTCGAACTCGATTTGCTGCGCCGCCGGGTGCAACGC
CAGGGCAAGCGGATCGACCTCACCGCCAAGGAGTTCGCCCTGCTCGAACTGCTGCTGCGGCGCAGCGGCGAG
GTGCTGCCCAAGTCGCTGATCGCCTCGCAGGTCTGGGACATGAACTTCGACAGCGATACCAACGTCATCGAG
GTGGCCATCCGCCGCCTGCGCGCCAAGGTCGACGACGACTACCCGCAGCGCCTGATCCATACCGTGCGCGGC
ATGGGCTACGTTCTCGAAGAGCGCGACGAATGA
Translation:
MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGWQILRSVRDAGMT
IPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGSQQLQETTLQLADLELDLLRRRVQR
QGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRG
MGYVLEERDE*
AnnotationID:3591GeneID:3583
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 09:09:42
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:copR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative transcriptional activator
Functional Category Confidence Code:5
COGs:COG0745,cd00156
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67771.1|AE016408_9 (AE016782) DNA-binding heavy metal response regulator [Pseudomonas
           putida KT2440]
          Length = 226

 Score =  350 bits (898), Expect = 4e-96
 Identities = 179/226 (79%), Positives = 197/226 (87%)

>gb|AAN70948.1|AE016739_1 (AE016794) transcriptional activator CopR [Pseudomonas putida
           KT2440]
          Length = 225

 Score =  325 bits (832), Expect = 2e-88
 Identities = 161/222 (72%), Positives = 188/222 (84%)

>emb|CAD17806.1| (AL646080) PROBABLE TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION
           REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 228

 Score =  318 bits (815), Expect = 2e-86
 Identities = 161/226 (71%), Positives = 189/226 (83%)








 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain 
and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 100.0% aligned
Score =  216 bits (551), Expect = 2e-57
Identities = 106/230 (46%), Positives = 141/230 (61%), Gaps = 6/230 (2%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  108 bits (270), Expect = 9e-25
Identities = 55/113 (48%), Positives = 75/113 (66%)






   
Genomic Context:






   
Comment:
other possible gene name: cusR


















    ReferenceID:7169




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24311




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36238




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3583_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3583
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5730
                           PA2809_tr
                           translation of PA2809
                           226
                           99.55
                           99.99
                           0
                           1126.0
     

     
     
159844
                           gb|AAG06197.1|AE004708_3
                           (AE004708) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           226
                           99.55
                           99.99
                           0
                           1126.0
     

     
     
159845
                           gb|AAN67771.1|AE016408_9
                           (AE016782) DNA-binding heavy metal response regulator [Pseudomonas putida KT2440]
                           226
                           79.20
                           87.16
                           0
                           898.0
     

     
     
159846
                           gb|AAN70948.1|AE016739_1
                           (AE016794) transcriptional activator CopR [Pseudomonas putida KT2440]
                           226
                           71.23
                           83.62
                           1
                           831.0
     

     
     
159848
                           dbj|BAA85309.1|
                           (AB033420) ORFR [Pseudomonas syringae]
                           228
                           71.05
                           82.89
                           2
                           821.0
     

     






      

          
GC ORFID: 46585How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2809Glimmer Score: 

          
Start: 2542373Stop: 2543053

          
Length: 681


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2809 translation of PA2809Homolog Bit Score 438.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 318.0), t_PA4885 (ORF: BLASTX 288.0), psyr_15may02_Scaffold9_revised_gene8194 (ORF: BLASTX 275.0), t_PA1437 (ORF: BLASTX 269.0), psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 253.0), t_PA2523 (ORF: BLASTX 244.0), psyr_15may02_Scaffold11_revised_gene1928 (ORF: BLASTX 184.0), t_PA0756 (ORF: BLASTX 163.0), psyr_15may02_Scaffold5_revised_gene6444 (ORF: BLASTX 163.0), t_PA4776 (ORF: BLASTX 162.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 162.0), t_PA1179 (ORF: BLASTX 158.0), t_PA2657 (ORF: BLASTX 157.0), psyr_15may02_Scaffold17_revised_gene2789 (ORF: BLASTX 155.0), t_PA4381 (ORF: BLASTX 154.0), psyr_15may02_Scaffold16_revised_gene2699 (ORF: BLASTX 152.0), t_PA2809 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTGCTGATCGTCGAAGACGAACCGCGCATCGGCCAGTACCTGCGCCAGGGGCTCGCCGAGGCAGGC 
TTCGCCGTCGACCTGAGCGACGATGGCAACGAGGGCGAGCAACTGGCCCTGGGCGGCGACTACGACCTGCTG 
ATCCTCGACGTCATGCTGCCCGGCCGTGACGGCTGGCAGATCCTGCGCAGCGTGCGCGACGCCGGGATGACC 
ATACCGGTGCTGTTCCTGACCGCCCGCGATGCCGTAGAGGACCGCGTGCGCGGCCTCGAACAAGGCGCCGAC 
GATTACCTGGTGAAGCCGTTCGCCTTCGTCGAACTGCTCGCCCGGGTGCGCACCCTGCTGCGCCGGGGCAGC 
CAGCAGTTGCAGGAGACCACCCTGCAACTGGCCGACCTCGAACTCGATTTGCTGCGCCGCCGGGTGCAACGC 
CAGGGCAAGCGGATCGACCTCACCGCCAAGGAGTTCGCCCTGCTCGAACTGCTGCTGCGGCGCAGCGGCGAG 
GTGCTGCCCAAGTCGCTGATCGCCTCGCAGGTCTGGGACATGAACTTCGACAGCGATACCAACGTCATCGAG 
GTGGCCATCCGCCGCCTGCGCGCCAAGGTCGACGACGACTACCCGCAGCGCCTGATCCATACCGTGCGCGGC 
ATGGGCTACGTTCTCGAAGAGCGCGACGAATGA