ViewGene
Locus Name:
GeneID:
Location:

GeneID:3582
TrivialName: PA14_53550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53550
PAO1 Ortholog Locus:PA0828
Sequence Length:684
Protein Length:227
Start: 4748703
Stop: 4748020
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04217.1|AE004517_12 (AE004517) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 222/227 (97%), Positives = 223/227 (98%)
Sequence:
ATGGCAACGGCGCAGTGGGACGGCTTGCAGGCGGTATTCGAGGACCTCGGCGGCTACGGCGCGCTGGCGCGC
CAGGCGGCGCAGGGCGAGGGGCCGCTGGTGGGGCATCTGCAACGGACCAACATCCAGCTCGCGGCGATCCCG
GTGTTCACCCGCAAGGGAGTCGCCGAGACCACGGTCAACGACCTGCTGGAGGCGGCGCGGGTCTCGCGGCGG
ACTTTCTACAAGTATTTCGCCGGCAAGCTGGAGGTGCTGGAAAGCATCTACCACAGCGCCGTGCAATTGCTG
CTGGCGCGCTTCGGCGGGCTGCGCAGCGAGGCAGGCAGCGACGAGGACTGGCTGCGGGCGATGGTCTCGCTG
TTCTTCGACTACCACCTGGCGGTCGGTCCGATCATCCGCATGATGCAGGAGGAGGCCCTGCATGCCGGCTCG
CCGCTGGCGGCGCACCGGCAGCGCGCGCACCTGAAGATTATCGAGCTGTGGGCCGAGCGCCTGGGCGCCCAG
GGTGCGGCCCACGATGCGCTGACCTACCGGGTGCTGATCTGGGCGATGGAGGCGGCTTCGCTGGAGCTGCTC
AATGCCAGCGACCCGCTGGAGCTGCCGCGGGTCAAGCGGGTGCTCGGCGACCTGCTGGTGGGTACGCTCTGT
CCCAGCACCCAGGCTCTGACGAGACTGCAAGGGTAA
Translation:
MATAQWDGLQAVFEDLGGYGALARQAAQGEGPLVGHLQRTNIQLAAIPVFTRKGVAETTVNDLLEAARVSRR
TFYKYFAGKLEVLESIYHSAVQLLLARFGGLRSEAGSDEDWLRAMVSLFFDYHLAVGPIIRMMQEEALHAGS
PLAAHRQRAHLKIIELWAERLGAQGAAHDALTYRVLIWAMEAASLELLNASDPLELPRVKRVLGDLLVGTLC
PSTQALTRLQG*
AnnotationID:3590GeneID:3582
AnnotatorUID: danlee
Modification Date/Time: 2004-04-29 14:02:37
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0828
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
        CD-Length = 201 residues,  93.5% aligned
        Score = 45.8 bits (106), Expect = 8e-06






   
Genomic Context:






   
Comment:


















    ReferenceID:7167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24309




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3582
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5729
                           PA0828_tr
                           translation of PA0828
                           227
                           97.79
                           98.23
                           0
                           1127.0
     

     
     
159843
                           gb|AAG04217.1|AE004517_12
                           (AE004517) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           227
                           97.79
                           98.23
                           0
                           1127.0
     

     






      

          
GC ORFID: 46584How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0828Glimmer Score: 

          
Start: 205204Stop: 205887

          
Length: 684


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0828 translation of PA0828Homolog Bit Score 438.0

          
Other Homologs:  t_PA0828 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAACGGCGCAGTGGGACGGCTTGCAGGCGGTATTCGAGGACCTCGGCGGCTACGGCGCGCTGGCGCGC 
CAGGCGGCGCAGGGCGAGGGGCCGCTGGTGGGGCATCTGCAACGGACCAACATCCAGCTCGCGGCGATCCCG 
GTGTTCACCCGCAAGGGAGTCGCCGAGACCACGGTCAACGACCTGCTGGAGGCGGCGCGGGTCTCGCGGCGG 
ACTTTCTACAAGTATTTCGCCGGCAAGCTGGAGGTGCTGGAAAGCATCTACCACAGCGCCGTGCAATTGCTG 
CTGGCGCGCTTCGGCGGGCTGCGCAGCGAGGCAGGCAGCGACGAGGACTGGCTGCGGGCGATGGTCTCGCTG 
TTCTTCGACTACCACCTGGCGGTCGGTCCGATCATCCGCATGATGCAGGAGGAGGCCCTGCATGCCGGCTCG 
CCGCTGGCGGCGCACCGGCAGCGCGCGCACCTGAAGATTATCGAGCTGTGGGCCGAGCGCCTGGGCGCCCAG 
GGTGCGGCCCACGATGCGCTGACCTACCGGGTGCTGATCTGGGCGATGGAGGCGGCTTCGCTGGAGCTGCTC 
AATGCCAGCGACCCGCTGGAGCTGCCGCGGGTCAAGCGGGTGCTCGGCGACCTGCTGGTGGGTACGCTCTGT 
CCCAGCACCCAGGCTCTGACGAGACTGCAAGGGTAA