ViewGene
Locus Name:
GeneID:
Location:

GeneID:3581
TrivialName: PA14_04080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04080
PAO1 Ortholog Locus:PA0313
Sequence Length:693
Protein Length:230
Start: 367766
Stop: 367074
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03702.1|AE004469_7 (AE004469) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 230/230 (100%), Positives = 230/230 (100%)
Sequence:
ATGAATTCGCTGCAGAAATTGCTCGAATGGCTCGCCAACCTGGTCGAGCTGCTCGGGATGGCCTGGCCCTTC
CTGCTCCAGGGCGCGATGTATACCGTGCTGTTCGCCGCGGTATCGATGGTCCTGGGCCTGATCCTCGGCTTC
AGCGTCGCGGTGGTCCGGGTGACCAAGGTGCCGGTGGTCTCGCAGATCGCCGCGGTCTACGTCAGCGCCTTC
CGCGGGACGCCACTGCTGGTGCAGATCTTCGTCCTGTACTACGGGCTGCCGAGCGTCGGCATCGAGTTCACC
CCGGTCACCGCGGGCATCCTGGCGCTGACCCTGAATGTCGCGGCCTATCTCTCGGAGTCCATGCGCGGGGCG
ATCCTCGGCATCGACAAGGGACAATGGGAAGCCGGGCTCTCGGTCGGCCTGACCTGGGGCCAGACCCTGTGG
AACATCATCACTCCGCAGGCCCTGCGCCTGGCGGTGCCGAGCCTGTCGAACAGCCTGATCAGCCTGATCAAG
GACACTTCGCTGATCTCCGTGATCACCGTGACCGAGCTGATGCTGGCGACCAAGGAGGTCATCGCCGAGACC
TTCCAGCCGCTGCCGCTCTATCTCGCTGCCGCCGGGATCTACTGGCTGCTTTCGGCGCTCTTCGAGCGTGTG
CAGAAAGCCCTGGAGAACCGCTTGACCGCGCCGCTGCGGCGCTGA
Translation:
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAF
RGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLW
NIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERV
QKALENRLTAPLRR*
AnnotationID:3589GeneID:3581
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 08:08:54
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:yecS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0765,COG4160,COG4215
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF10145.1|AE001914_7 (AE001914) amino acid ABC transporter, permease protein
           [Deinococcus radiodurans]
          Length = 226

 Score =  226 bits (576), Expect = 8e-59
 Identities = 121/217 (55%), Positives = 162/217 (74%)

>gb|AAN65858.1|AE016214_3 (AE016774) cysteine ABC transporter, permease protein, putative
           [Pseudomonas putida KT2440]
          Length = 222

 Score =  205 bits (521), Expect = 2e-52
 Identities = 101/214 (47%), Positives = 149/214 (69%)

>gb|AAK23421.1| (AE005818) cystine ABC tranporter, permease protein, putative
           [Caulobacter crescentus CB15]
          Length = 219

 Score =  204 bits (519), Expect = 3e-52
 Identities = 103/209 (49%), Positives = 143/209 (68%)






 
Structural Features:
COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  99.5% aligned
Score =  208 bits (530), Expect = 7e-55
Identities = 101/221 (45%), Positives = 142/221 (64%), Gaps = 1/221 (0%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  96.1% aligned
Score =  156 bits (396), Expect = 2e-39
Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 10/219 (4%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  97.0% aligned
Score =  148 bits (374), Expect = 6e-37
Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 14/223 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7165




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24307




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33652




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3581_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3581
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5728
                           PA0313_tr
                           translation of PA0313
                           230
                           99.99
                           99.99
                           0
                           1129.0
     

     
     
159772
                           gb|AAG03702.1|AE004469_7
                           (AE004469) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           230
                           99.99
                           99.99
                           0
                           1129.0
     

     
     
159773
                           gb|AAQ61712.1|
                           (AE016924) probable amino acid ABC transporter, permease protein [Chromobacterium violaceum ATCC 12472]
                           230
                           70.86
                           82.17
                           10
                           803.0
     

     
     
159774
                           gb|AAF10145.1|AE001914_7
                           (AE001914) amino acid ABC transporter, permease protein [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           234
                           53.84
                           70.51
                           12
                           578.0
     

     
     
159776
                           gb|AAK23421.1|
                           (AE005818) cystine ABC tranporter, permease protein, putative [Caulobacter crescentus CB15]
                           230
                           46.08
                           63.91
                           11
                           514.0
     

     






      

          
GC ORFID: 46583How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0313Glimmer Score: 

          
Start: 6169108Stop: 6168416

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0313 translation of PA0313Homolog Bit Score 439.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3824 (ORF: BLASTX 202.0), t_PA0313 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTCGCTGCAGAAATTGCTCGAATGGCTCGCCAACCTGGTCGAGCTGCTCGGGATGGCCTGGCCCTTC 
CTGCTCCAGGGCGCGATGTATACCGTGCTGTTCGCCGCGGTATCGATGGTCCTGGGCCTGATCCTCGGCTTC 
AGCGTCGCGGTGGTCCGGGTGACCAAGGTGCCGGTGGTCTCGCAGATCGCCGCGGTCTACGTCAGCGCCTTC 
CGCGGGACGCCACTGCTGGTGCAGATCTTCGTCCTGTACTACGGGCTGCCGAGCGTCGGCATCGAGTTCACC 
CCGGTCACCGCGGGCATCCTGGCGCTGACCCTGAATGTCGCGGCCTATCTCTCGGAGTCCATGCGCGGGGCG 
ATCCTCGGCATCGACAAGGGACAATGGGAAGCCGGGCTCTCGGTCGGCCTGACCTGGGGCCAGACCCTGTGG 
AACATCATCACTCCGCAGGCCCTGCGCCTGGCGGTGCCGAGCCTGTCGAACAGCCTGATCAGCCTGATCAAG 
GACACTTCGCTGATCTCCGTGATCACCGTGACCGAGCTGATGCTGGCGACCAAGGAGGTCATCGCCGAGACC 
TTCCAGCCGCTGCCGCTCTATCTCGCTGCCGCCGGGATCTACTGGCTGCTTTCGGCGCTCTTCGAGCGTGTG 
CAGAAAGCCCTGGAGAACCGCTTGACCGCGCCGCTGCGGCGCTGA