ViewGene

Locus Name:
GeneID:
Location:

GeneID:3580
TrivialName: PA14_72660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72660
PAO1 Ortholog Locus:PA5507
Sequence Length:654
Protein Length:217
Start: 6472155
Stop: 6472808
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08892.1|AE004963_5 (AE004963) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 215/217 (99%), Positives = 216/217 (99%)
Sequence:
ATGTTCAGCCTGCCCCACCACTCGCCGCGCGACCTGCCGTTCGGCCGCCGGCAGACCGCCATCCTGTTCGTC
GACATGCAGCGCGCCTGGGTCGAGCCGGGGCGCGACCCGCACGTCGATCCGCAGGCGGCCGGCTACTTCTAC
GAGCGCGTGCAGAACCAGGTGATCCCCAACCAGCAGCGCCTGCTCGGGGCCATGCGCGCAGTGGACGAGAAC
GTCCTGCACACCATCATCGAGAGCCTCACCGCCGATGGCCGCGACCGCTCGCTGGATCACAAGCTGTCGGAG
ATGCACCTGCCCAAGGGCAGCCCGGACGCCAGGGTGATCGACGCCCTGGAGCCGACCGCCAACGAGATCGTG
CTGCCGAAGACCTCTTCCGGCGTTTTCAACTCCACCGCCATCGACTACGTACTGCGCAACCTCGGCACCCGC
CACCTGATCGTCTGCGGGGTGGTCACCGACCAGTGCGTGGACATGGCCGTGCGCGATGCCGCCGACCGCGGC
TACCTGGTCACCCTGGTCGAGGATGCCTGTGCCACCCATACCCCGGAACGCCACCAGGCCTGCCTGGAAGCG
ATCAAGGGCTACTGCTGGATCAGCGACACCGAGACCGTCCTGCAACGCATCGCCGCCCTCGGCCGGAGCAAC
CTGTGA
Translation:
MFSLPHHSPRDLPFGRRQTAILFVDMQRAWVEPGRDPHVDPQAAGYFYERVQNQVIPNQQRLLGAMRAVDEN
VLHTIIESLTADGRDRSLDHKLSEMHLPKGSPDARVIDALEPTANEIVLPKTSSGVFNSTAIDYVLRNLGTR
HLIVCGVVTDQCVDMAVRDAADRGYLVTLVEDACATHTPERHQACLEAIKGYCWISDTETVLQRIAALGRSN
L*
AnnotationID:3588GeneID:3580
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:47
Gene Name:
Confidence Code:3
GeneProduct:putative amidase
Cell Localization:()
Synonyms:PA5507
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative isochorismate hydrolase
Functional Category Confidence Code:5
COGs:COG1335,pfam00857
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
COG1335, PncA, Amidases related to nicotinamidase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 205 residues,  99.0% aligned
Score =  119 bits (299), Expect = 3e-28
Identities = 64/211 (30%), Positives = 87/211 (41%), Gaps = 22/211 (10%)

pfam00857, Isochorismatase, Isochorismatase family.  
This family are hydrolase enzymes.
CD-Length = 183 residues,  97.8% aligned
Score =  100 bits (250), Expect = 2e-22
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:7163
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24305
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33278
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3580_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3580

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5727 PA5507_tr translation of PA5507 217 99.07 99.53 0 1128.0
159769 gb|AAG08892.1|AE004963_5 (AE004963) hypothetical protein PA5507 [Pseudomonas aeruginosa PAO1] 217 99.07 99.53 0 1128.0
159770 emb|CAC47161.1| (AL591791) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] 223 51.12 64.12 12 543.0
159771 emb|CAD78050.1| (BX294156) N-carbamoylsarcosine amidase related protein-putative amidase [Pirellula sp.] [Pirellula sp. 1] 252 37.30 51.58 40 385.0
GC ORFID: 46582How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5507Glimmer Score:
Start: 5735844Stop: 5736497
Length: 654
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5507 translation of PA5507Homolog Bit Score 439.0
Other Homologs: t_PA5507 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCAGCCTGCCCCACCACTCGCCGCGCGACCTGCCGTTCGGCCGCCGGCAGACCGCCATCCTGTTCGTC
GACATGCAGCGCGCCTGGGTCGAGCCGGGGCGCGACCCGCACGTCGATCCGCAGGCGGCCGGCTACTTCTAC
GAGCGCGTGCAGAACCAGGTGATCCCCAACCAGCAGCGCCTGCTCGGGGCCATGCGCGCAGTGGACGAGAAC
GTCCTGCACACCATCATCGAGAGCCTCACCGCCGATGGCCGCGACCGCTCGCTGGATCACAAGCTGTCGGAG
ATGCACCTGCCCAAGGGCAGCCCGGACGCCAGGGTGATCGACGCCCTGGAGCCGACCGCCAACGAGATCGTG
CTGCCGAAGACCTCTTCCGGCGTTTTCAACTCCACCGCCATCGACTACGTACTGCGCAACCTCGGCACCCGC
CACCTGATCGTCTGCGGGGTGGTCACCGACCAGTGCGTGGACATGGCCGTGCGCGATGCCGCCGACCGCGGC
TACCTGGTCACCCTGGTCGAGGATGCCTGTGCCACCCATACCCCGGAACGCCACCAGGCCTGCCTGGAAGCG
ATCAAGGGCTACTGCTGGATCAGCGACACCGAGACCGTCCTGCAACGCATCGCCGCCCTCGGCCGGAGCAAC
CTGTGA