ViewGene
Locus Name:
GeneID:
Location:

GeneID:3576
TrivialName: PA14_27580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27580
PAO1 Ortholog Locus:PA2821
Sequence Length:663
Protein Length:220
Start: 2394416
Stop: 2393754
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06209.1|AE004709_2 (AE004709) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 219/220 (99%), Positives = 219/220 (99%)
Sequence:
ATGAGCCTGACACTCTACGGAGCCCCGCTGTCTCCGTTCGTCCGCAAGGTCCGCCTGCTCCTGGCCGAAAAG
GGCCTCGACTACCAGTTGGAAGCGATCGCCCCGTTCGGCCAGCCGGCCTGGTATCGCGAGATCAGCCCGCTG
GGCCGCATCCCGGCGTTGCGCGACGGCGACCTGGCCCTCGCCGACTCCAGCGTGATCTGCCAGTACCTGGAA
GAACGCTATCCCGAACCGCCGAATCTCCAGGGCGACGCCCCCGCCGGCCGCGCAGCGGTGCGCTGGCTGGAA
AAATACGCCGACTACGAGATCGCTCCCCTGGCCACGCTGACGATCTTCCGCAACCGGATACTCAAGCCGGCG
ATGGGCCAGGCCTGCGAGGAGAACGACGTGCGTCGCGCGCTGGAGGAAAAGCTGCCAGCGCACTTCGATTAC
CTGGAAAACCATCTCGACGGCCGGGCCTTCTTCGTCGGCGAGCGGCTGACCCTCGCCGACCTGGCGATCGCC
AGCCAGTTGGTCAACCTGCGTCACGCCGGCGAAAACCTGGACGAGCAACGCTGGCCGGCCCTCGCCGCGCAT
TTCGCGCGGATGCTCGAACGCCCGGCGATGCAAGCGCTGCTGCCGGGGGAACGACGGACCCTCGACAAGCTC
GCAGCGAAAGCCTGA
Translation:
MSLTLYGAPLSPFVRKVRLLLAEKGLDYQLEAIAPFGQPAWYREISPLGRIPALRDGDLALADSSVICQYLE
ERYPEPPNLQGDAPAGRAAVRWLEKYADYEIAPLATLTIFRNRILKPAMGQACEENDVRRALEEKLPAHFDY
LENHLDGRAFFVGERLTLADLAIASQLVNLRHAGENLDEQRWPALAAHFARMLERPAMQALLPGERRTLDKL
AAKA*
AnnotationID:3584GeneID:3576
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 19:07:59
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:2.5.1.18
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  98.1% aligned
Score =  123 bits (309), Expect = 2e-29
Identities = 74/214 (34%), Positives = 109/214 (50%), Gaps = 12/214 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7155




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24297




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36235




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3576_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3576
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5717
                           PA2821_tr
                           translation of PA2821
                           220
                           99.54
                           99.54
                           0
                           1129.0
     

     
     
159243
                           gb|AAG06209.1|AE004709_2
                           (AE004709) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           220
                           99.54
                           99.54
                           0
                           1129.0
     

     
     
159244
                           gb|AAK24056.1|
                           (AE005881) glutathione S-transferase [Caulobacter crescentus CB15]
                           222
                           38.73
                           53.15
                           14
                           373.0
     

     






      

          
GC ORFID: 46578How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2821Glimmer Score: 

          
Start: 2559511Stop: 2560173

          
Length: 663


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2821 translation of PA2821Homolog Bit Score 439.0

          
Other Homologs:  t_PA2821 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGACACTCTACGGAGCCCCGCTGTCTCCGTTCGTCCGCAAGGTCCGCCTGCTCCTGGCCGAAAAG 
GGCCTCGACTACCAGTTGGAAGCGATCGCCCCGTTCGGCCAGCCGGCCTGGTATCGCGAGATCAGCCCGCTG 
GGCCGCATCCCGGCGTTGCGCGACGGCGACCTGGCCCTCGCCGACTCCAGCGTGATCTGCCAGTACCTGGAA 
GAACGCTATCCCGAACCGCCGAATCTCCAGGGCGACGCCCCCGCCGGCCGCGCAGCGGTGCGCTGGCTGGAA 
AAATACGCCGACTACGAGATCGCTCCCCTGGCCACGCTGACGATCTTCCGCAACCGGATACTCAAGCCGGCG 
ATGGGCCAGGCCTGCGAGGAGAACGACGTGCGTCGCGCGCTGGAGGAAAAGCTGCCAGCGCACTTCGATTAC 
CTGGAAAACCATCTCGACGGCCGGGCCTTCTTCGTCGGCGAGCGGCTGACCCTCGCCGACCTGGCGATCGCC 
AGCCAGTTGGTCAACCTGCGTCACGCCGGCGAAAACCTGGACGAGCAACGCTGGCCGGCCCTCGCCGCGCAT 
TTCGCGCGGATGCTCGAACGCCCGGCGATGCAAGCGCTGCTGCCGGGGGAACGACGGACCCTCGACAAGCTC 
GCAGCGAAAGCCTGA