ViewGene
Locus Name:
GeneID:
Location:

GeneID:3574
TrivialName: PA14_40110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40110
PAO1 Ortholog Locus:PA1887
Sequence Length:669
Protein Length:222
Start: 3574471
Stop: 3575139
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05276.1|AE004614_10 (AE004614) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 220/222 (99%), Positives = 221/222 (99%)
Sequence:
ATGAAAACCCTCTCTAGCCTGCTCCTGATCGGCTTCGCCGTCGTTCTGCTCGCCCCGCGGATGGCGCCCGCC
GCCAGCGCCGCCGAAGACAAGGCCACCTATTGCGGCTCCGGCTTCACCCAGTATCTGGTTCCGGACGACGTC
GCGGGCTGCTCGCTCAGCGAGGCCTGCCGCCTGCACGATATCTGCTACGGCCGCTGCGACAAGGACGGCGAC
CTCTACGGCAGCGCCTACTGCGCGCAAAGCGAAAAGTCCGAAGCCCGCAACATGAGCAAGCAGCAGTGCGAC
GCCAGGCTGCAGGCCGACATCGCCGCACAGAACGGCAACAGCCGCCTGTGCCGCGCGGTGGGAGGCGTCTAC
CGGGTATTCGTGAAGCACCTGGGGCAAGGTCCGTTCAATGGCCGGGAGGCACTGGACATCTACCTGAAGGTC
ATGCAATCGGCGCCCAGCGCAGCCGACGCCGACGCCCGCCTCGAAGCCATCCATCAGCTACAGAAGCAGGGC
CTGACCGACGCCAAGGAAATCCGTTACGACGCCGAGCGTATCGTCATCCCACTCAACAGGCCCGTGGAATCG
CCGTTGACCAACGGCTCGGACACTCTCGTCCTGCCGCGCAACCTCGACCGGGAACGGCTGCGCCAGCTGGAC
CAGCGGCTCATCCGCCAATGA
Translation:
MKTLSSLLLIGFAVVLLAPRMAPAASAAEDKATYCGSGFTQYLVPDDVAGCSLSEACRLHDICYGRCDKDGD
LYGSAYCAQSEKSEARNMSKQQCDARLQADIAAQNGNSRLCRAVGGVYRVFVKHLGQGPFNGREALDIYLKV
MQSAPSAADADARLEAIHQLQKQGLTDAKEIRYDAERIVIPLNRPVESPLTNGSDTLVLPRNLDRERLRQLD
QRLIRQ*
AnnotationID:3582GeneID:3574
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 09:09:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1887
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7151




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24293




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3574
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5714
                           PA1887_tr
                           translation of PA1887
                           222
                           99.09
                           99.54
                           0
                           1130.0
     

     
     
159228
                           gb|AAG05276.1|AE004614_10
                           (AE004614) hypothetical protein PA1887 [Pseudomonas aeruginosa PAO1]
                           222
                           99.09
                           99.54
                           0
                           1130.0
     

     






      

          
GC ORFID: 46576How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1887Glimmer Score: 

          
Start: 1379439Stop: 1378771

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1887 translation of PA1887Homolog Bit Score 439.0

          
Other Homologs:  t_PA1887 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCCTCTCTAGCCTGCTCCTGATCGGCTTCGCCGTCGTTCTGCTCGCCCCGCGGATGGCGCCCGCC 
GCCAGCGCCGCCGAAGACAAGGCCACCTATTGCGGCTCCGGCTTCACCCAGTATCTGGTTCCGGACGACGTC 
GCGGGCTGCTCGCTCAGCGAGGCCTGCCGCCTGCACGATATCTGCTACGGCCGCTGCGACAAGGACGGCGAC 
CTCTACGGCAGCGCCTACTGCGCGCAAAGCGAAAAGTCCGAAGCCCGCAACATGAGCAAGCAGCAGTGCGAC 
GCCAGGCTGCAGGCCGACATCGCCGCACAGAACGGCAACAGCCGCCTGTGCCGCGCGGTGGGAGGCGTCTAC 
CGGGTATTCGTGAAGCACCTGGGGCAAGGTCCGTTCAATGGCCGGGAGGCACTGGACATCTACCTGAAGGTC 
ATGCAATCGGCGCCCAGCGCAGCCGACGCCGACGCCCGCCTCGAAGCCATCCATCAGCTACAGAAGCAGGGC 
CTGACCGACGCCAAGGAAATCCGTTACGACGCCGAGCGTATCGTCATCCCACTCAACAGGCCCGTGGAATCG 
CCGTTGACCAACGGCTCGGACACTCTCGTCCTGCCGCGCAACCTCGACCGGGAACGGCTGCGCCAGCTGGAC 
CAGCGGCTCATCCGCCAATGA