ViewGene
Locus Name:
GeneID:
Location:

GeneID:3573
TrivialName: PA14_50310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50310
PAO1 Ortholog Locus:PA1090
Sequence Length:663
Protein Length:220
Start: 4472970
Stop: 4472308
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04479.1|AE004539_21 (AE004539) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 220/220 (100%), Positives = 220/220 (100%)
Sequence:
GTGTCGCCTATTGAACATGCTGTGATCAGCGCGGCGGGCATCGGCTCTCGTCTGGGACTGAACAAACCCAAG
TGCCTGGTCGAGGTTGGTGGCAAGACGCTGCTGGCCCAGCACCTCGAGCGCCTGGCGGAGATCCCGAACGTC
TGGGTCGTGGTGGGGTTCCAGGAGGAACTGGTCATCGAGCAGGTGCGCAACCTGCGCAGGGACGCGATCATC
GTGCGCAACCCCGATTTCGACCGAACCAATACCTTGCAGAGCATCCACCGGGTTTCGCGTTATCTCGACCGG
CGCTTCCTCGCCGTGGATGGCGACACCTTCATCGAGAATCGCTCGTTCGAACGCTTTCTCCGCGCCGCCGCC
GGGCAGGCGGGCCTGATCGGCGTCTCGCGCTACACCACCAGCGATGGCGTGCGTGTTCTGCTGGATGCGGGT
GGCGAGGCGGTCACAGCTTTCACCCGCGAGCCGCAGCACGCCTACGAATGGACGGGTATCGCGATTCTCCGG
CCGGACATGGTGGTGGACCGGCCGATATACGTGTACCAGGCGCTCGAACCGTACCTGCCGCTGCCCGCGCAG
GAACTCGACGCCTTCGACATCGATACCGCCAGCGACCTGGATATGGCGCGGCGCGTGCACCTGAATAACTGG
AACCTGAATGATTGA
Translation:
MSPIEHAVISAAGIGSRLGLNKPKCLVEVGGKTLLAQHLERLAEIPNVWVVVGFQEELVIEQVRNLRRDAII
VRNPDFDRTNTLQSIHRVSRYLDRRFLAVDGDTFIENRSFERFLRAAAGQAGLIGVSRYTTSDGVRVLLDAG
GEAVTAFTREPQHAYEWTGIAILRPDMVVDRPIYVYQALEPYLPLPAQELDAFDIDTASDLDMARRVHLNNW
NLND*
AnnotationID:3581GeneID:3573
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:07
Gene Name:
Confidence Code:3
GeneProduct:Possible sugar nucleotidyltransferase
Cell Localization:()
Synonyms:PA1090
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1213
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
             CD-Length = 239 residues,  98.7% aligned
             Score =  229 bits (586), Expect = 2e-61






   
Genomic Context:






   
Comment:


















    ReferenceID:14883




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3573
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5713
                           PA1090_tr
                           translation of PA1090
                           220
                           99.99
                           99.99
                           0
                           1128.0
     

     
     
159227
                           gb|AAG04479.1|AE004539_21
                           (AE004539) hypothetical protein PA1090 [Pseudomonas aeruginosa PAO1]
                           220
                           99.54
                           99.99
                           0
                           1125.0
     

     






      

          
GC ORFID: 46575How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1090Glimmer Score: 

          
Start: 480938Stop: 481600

          
Length: 663


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1090 translation of PA1090Homolog Bit Score 439.0

          
Other Homologs:  t_PA1090 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCGCCTATTGAACATGCTGTGATCAGCGCGGCGGGCATCGGCTCTCGTCTGGGACTGAACAAACCCAAG 
TGCCTGGTCGAGGTTGGTGGCAAGACGCTGCTGGCCCAGCACCTCGAGCGCCTGGCGGAGATCCCGAACGTC 
TGGGTCGTGGTGGGGTTCCAGGAGGAACTGGTCATCGAGCAGGTGCGCAACCTGCGCAGGGACGCGATCATC 
GTGCGCAACCCCGATTTCGACCGAACCAATACCTTGCAGAGCATCCACCGGGTTTCGCGTTATCTCGACCGG 
CGCTTCCTCGCCGTGGATGGCGACACCTTCATCGAGAATCGCTCGTTCGAACGCTTTCTCCGCGCCGCCGCC 
GGGCAGGCGGGCCTGATCGGCGTCTCGCGCTACACCACCAGCGATGGCGTGCGTGTTCTGCTGGATGCGGGT 
GGCGAGGCGGTCACAGCTTTCACCCGCGAGCCGCAGCACGCCTACGAATGGACGGGTATCGCGATTCTCCGG 
CCGGACATGGTGGTGGACCGGCCGATATACGTGTACCAGGCGCTCGAACCGTACCTGCCGCTGCCCGCGCAG 
GAACTCGACGCCTTCGACATCGATACCGCCAGCGACCTGGATATGGCGCGGCGCGTGCACCTGAATAACTGG 
AACCTGAATGATTGA