ViewGene
Locus Name:
GeneID:
Location:

GeneID:3572
TrivialName: PA14_59620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59620
PAO1 Ortholog Locus:
Sequence Length:666
Protein Length:221
Start: 5305668
Stop: 5305003
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84180.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 221/221 (100%), Positives = 221/221 (100%)
Sequence:
ATGAACAACACAGTGAGCGAAACGCAACAGATCAATATTTACCAAAATCCGGGGCAGTCTATTTCCGGTCTC
TACAAGGGGCTGGCTAACCAGTGCTCTCCTGGCCAGCCATTTCCAGAGGTACAGCTTGTGGAGGCTTGGGAT
ATCCCTCTCGTACTCCATCCGGAGTTTGTGCCTAACGGAGATGTCTCGAAAATCGATAAGGAGTACGGAACG
ATCCTTGCTGCTGAGTCAGCTCAGGTTATCCTGCTTCAACTCCAAATGGCTCAAGACAAGGCTAAGGCGTGC
GGGGAGGTTACAGCCTTGATCAGTTCTGTCTCCTCCAATCTCAATACCATTAAGAGTCGTCATGGTGCTAAT
TATCTAAACCTGCTGAAACAATCACCGAACCGATACCCGACTAGCGTCGGAGTTGAGATCATGTCAGGTGGC
AGTCCGAACCAGGATTCTGGAATCGAGGTCTCTTACGGTGCCAGTCTCGGCCGTCTAACTCAATCACAACTT
CAGGCGATGAATCTGCCTGCCAGTCTCAAACAGTTGCTCACTCAGGGAATCGGTGTGAAGCTTTCTCAGCCT
GAATATTGGCCTGCTTACAACAACATAGCCACTGGTATTCGTTATACAACCGGAGTGGCGATAACGTTGGCC
TATTGGGCCACGGTTTAG
Translation:
MNNTVSETQQINIYQNPGQSISGLYKGLANQCSPGQPFPEVQLVEAWDIPLVLHPEFVPNGDVSKIDKEYGT
ILAAESAQVILLQLQMAQDKAKACGEVTALISSVSSNLNTIKSRHGANYLNLLKQSPNRYPTSVGVEIMSGG
SPNQDSGIEVSYGASLGRLTQSQLQAMNLPASLKQLLTQGIGVKLSQPEYWPAYNNIATGIRYTTGVAITLA
YWATV*
AnnotationID:3580GeneID:3572
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 19:07:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7147




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24289




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3572
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
159225
                           gb|AAP84180.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           221
                           99.99
                           99.99
                           0
                           1131.0
     

     
     
5712
                           PA2222_tr
                           translation of PA2222
                           222
                           46.39
                           65.31
                           8
                           559.0
     

     
     
159226
                           gb|AAG05610.1|AE004649_1
                           (AE004649) hypothetical protein PA2222 [Pseudomonas aeruginosa PAO1]
                           222
                           46.39
                           65.31
                           8
                           559.0
     

     






      

          
GC ORFID: 46574How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL055Glimmer Score: 

          
Start: 4569347Stop: 4568682

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL055 221 Homolog: PA2222 / Hypothetical protein / P.aeruginosa / PA01 (AAG05610) translation of RL055Homolog Bit Score 440.0

          
Other Homologs:  t_PA2222 (ORF: BLASTX 219.0)

          
GC ORF Sequence

           
ATGAACAACACAGTGAGCGAAACGCAACAGATCAATATTTACCAAAATCCGGGGCAGTCTATTTCCGGTCTC 
TACAAGGGGCTGGCTAACCAGTGCTCTCCTGGCCAGCCATTTCCAGAGGTACAGCTTGTGGAGGCTTGGGAT 
ATCCCTCTCGTACTCCATCCGGAGTTTGTGCCTAACGGAGATGTCTCGAAAATCGATAAGGAGTACGGAACG 
ATCCTTGCTGCTGAGTCAGCTCAGGTTATCCTGCTTCAACTCCAAATGGCTCAAGACAAGGCTAAGGCGTGC 
GGGGAGGTTACAGCCTTGATCAGTTCTGTCTCCTCCAATCTCAATACCATTAAGAGTCGTCATGGTGCTAAT 
TATCTAAACCTGCTGAAACAATCACCGAACCGATACCCGACTAGCGTCGGAGTTGAGATCATGTCAGGTGGC 
AGTCCGAACCAGGATTCTGGAATCGAGGTCTCTTACGGTGCCAGTCTCGGCCGTCTAACTCAATCACAACTT 
CAGGCGATGAATCTGCCTGCCAGTCTCAAACAGTTGCTCACTCAGGGAATCGGTGTGAAGCTTTCTCAGCCT 
GAATATTGGCCTGCTTACAACAACATAGCCACTGGTATTCGTTATACAACCGGAGTGGCGATAACGTTGGCC 
TATTGGGCCACGGTTTAG