ViewGene
Locus Name:
GeneID:
Location:

GeneID:3570
TrivialName: PA14_31460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31460
PAO1 Ortholog Locus:PA2558
Sequence Length:693
Protein Length:230
Start: 2735120
Stop: 2734428
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05946.1|AE004684_1 (AE004684) probable transport protein [Pseudomonas aeruginosa PAO1]
Identities = 230/230 (100%), Positives = 230/230 (100%)
Sequence:
ATGACCCCGGAAATCGCCATCGGCCTGGTGACGGCCCTCGGCCTCGGTGCGCTGGTCGGTCTCGAGCGGCAA
TGGCGACAACGCTCTTCCGGCATGGCCACCCACGCGATGGTCGCACTCGGTGCGGCCAGCTTCTCGATCCTG
CCGCTGTTGCTCGACAACGAGGTCAGCGTGACCCGCATGGCGGCCCAGGTAGTCAGCGGCATCGGTTTTCTC
GGCGCCGGCGTGATCATGCGCGACGGCCTCAGCGTACGCGGCCTGAGCACTGCGGCGAGCATCTGGAGCACC
GGCGCGATCGGCGTACTGGCCGGCAGCGGTTTCATCCTGGCGGCCTGCATGACGACCGCGCTGATCGTCATC
GCCAACCTGTTCCTGCCCGCTCTCGGCCGGGTGGTGGACCGCCACACCTCGGGCGAGGCCGAGCAGGAGCGC
TTCTACCAGATCAGCGTGTCCTGCGAGGCGCGCAACGAAGCGCTGGTGCGCATGCAGTTGCTGCAACGCATG
GGCGACAACCGCCTGAACCTGCAGAGCTTGGAAAGCCACGCGCTGAAAGGCAGCGGCAACGTAGAAGTGAAC
GCCGTGGTGTTCACCCTGCACAAGGAGGATTCGCTGGTGGAACAGATGGTCGGCGAGCTGTGCCTGGCACCG
CAGGTCACCGCCGCCAGTTGGGTGATGAATCCCGCCGCGGAATGA
Translation:
MTPEIAIGLVTALGLGALVGLERQWRQRSSGMATHAMVALGAASFSILPLLLDNEVSVTRMAAQVVSGIGFL
GAGVIMRDGLSVRGLSTAASIWSTGAIGVLAGSGFILAACMTTALIVIANLFLPALGRVVDRHTSGEAEQER
FYQISVSCEARNEALVRMQLLQRMGDNRLNLQSLESHALKGSGNVEVNAVVFTLHKEDSLVEQMVGELCLAP
QVTAASWVMNPAAE*
AnnotationID:3578GeneID:3570
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:06
Gene Name:
Confidence Code:3
GeneProduct:putative transport protein
Cell Localization:()
Synonyms:PA2558
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative membraine protein
Functional Category Confidence Code:5
COGs:COG1285,pfam02308
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL53294.1| (AE009643) MG(2+) TRANSPORT ATPASE PROTEIN C [Brucella melitensis
           16M]
          Length = 246

 Score =  176 bits (447), Expect = 7e-44
 Identities = 93/215 (43%), Positives = 139/215 (64%), Gaps = 1/215 (0%)

>gb|AAP11057.1| (AE017011) Mg(2+) transport ATPase protein C [Bacillus cereus ATCC
           14579]
          Length = 234

 Score =  174 bits (441), Expect = 4e-43
 Identities = 86/220 (39%), Positives = 141/220 (64%)






 
Structural Features:
COG1285, SapB, Uncharacterized membrane protein
CD-Length = 221 residues,  97.7% aligned
Score =  178 bits (454), Expect = 3e-46
Identities = 89/229 (38%), Positives = 125/229 (54%), Gaps = 17/229 (7%)

pfam02308, MgtC, MgtC family. The MgtC protein is found in an operon 
with the Mg2+ transporter protein MgtB.
CD-Length = 130 residues,  96.9% aligned
Score =  116 bits (292), Expect = 2e-27
Identities = 60/126 (47%), Positives = 88/126 (69%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7143




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24285




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33135




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3570_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3570
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5709
                           PA2558_tr
                           translation of PA2558
                           230
                           99.99
                           99.99
                           0
                           1132.0
     

     
     
159194
                           gb|AAG05946.1|AE004684_1
                           (AE004684) probable transport protein [Pseudomonas aeruginosa PAO1]
                           230
                           99.99
                           99.99
                           0
                           1132.0
     

     
     
159201
                           emb|CAC90482.1|
                           (AJ414149) Mg(2+) transport ATPase protein C [Yersinia pestis CO92]
                           240
                           40.41
                           59.16
                           14
                           404.0
     

     
     
159200
                           gb|AAM85387.1|AE013784_6
                           (AE013784) putative transport ATPase [Yersinia pestis KIM]
                           240
                           40.41
                           59.16
                           14
                           404.0
     

     
     
159208
                           gb|AAA72083.1|
                           (M57715) Mg2+ transport ATPase [Salmonella typhimurium]
                           240
                           39.58
                           56.25
                           19
                           368.0
     

     






      

          
GC ORFID: 46572How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2558Glimmer Score: 

          
Start: 2218806Stop: 2219498

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2558 translation of PA2558Homolog Bit Score 440.0

          
Other Homologs:  t_PA4635 (ORF: BLASTX 152.0), t_PA2558 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCCGGAAATCGCCATCGGCCTGGTGACGGCCCTCGGCCTCGGTGCGCTGGTCGGTCTCGAGCGGCAA 
TGGCGACAACGCTCTTCCGGCATGGCCACCCACGCGATGGTCGCACTCGGTGCGGCCAGCTTCTCGATCCTG 
CCGCTGTTGCTCGACAACGAGGTCAGCGTGACCCGCATGGCGGCCCAGGTAGTCAGCGGCATCGGTTTTCTC 
GGCGCCGGCGTGATCATGCGCGACGGCCTCAGCGTACGCGGCCTGAGCACTGCGGCGAGCATCTGGAGCACC 
GGCGCGATCGGCGTACTGGCCGGCAGCGGTTTCATCCTGGCGGCCTGCATGACGACCGCGCTGATCGTCATC 
GCCAACCTGTTCCTGCCCGCTCTCGGCCGGGTGGTGGACCGCCACACCTCGGGCGAGGCCGAGCAGGAGCGC 
TTCTACCAGATCAGCGTGTCCTGCGAGGCGCGCAACGAAGCGCTGGTGCGCATGCAGTTGCTGCAACGCATG 
GGCGACAACCGCCTGAACCTGCAGAGCTTGGAAAGCCACGCGCTGAAAGGCAGCGGCAACGTAGAAGTGAAC 
GCCGTGGTGTTCACCCTGCACAAGGAGGATTCGCTGGTGGAACAGATGGTCGGCGAGCTGTGCCTGGCACCG 
CAGGTCACCGCCGCCAGTTGGGTGATGAATCCCGCCGCGGAATGA