ViewGene
Locus Name:
GeneID:
Location:

GeneID:357
TrivialName: PA14_53900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53900
PAO1 Ortholog Locus:PA0799
Sequence Length:1992
Protein Length:663
Start: 4778779
Stop: 4780770
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04188.1|AE004515_4 (AE004515) probable helicase [Pseudomonas aeruginosa PAO1]
Identities = 662/663 (99%), Positives = 662/663 (99%)
Sequence:
ATGTTCGAACTGCCCGGCGACAACGCCTGGCTGCACTTCATGCAGGACGATCTGCCGCGCCTGCGCCAGCAG
GGCTGGTTCATCGACATCCGCGCTGACTTCGCCTACGACCTGACGCCCATCGACGCCTGGTACGCCGAGGTC
GAGGAAGCCGACGACCGCCAGTGGTTCGAGCTGGAACTGGGCATCCAGGTCGCCGGACAGCGGGTCAGCCTG
CTGCCGGCGCTGACCGAGCTGATCCGCCGCAGTCCGGCCCTGCTCGATCCGCGCGCCCTCGCCCGGCACGCC
GACGAAGAGCAACTGGTGCTGCGCCTGGAACTCAACCCGCCGCTGCGCGTGGCGCTGCCCTTCGGCCGTCTG
AAGCCGGTGCTGGCGACGCTTTCCGACTTCTACCTGGGCGACCCCGAACCGCAGCGCAAGCTGCGCCTGGGC
GCACCGGACGCGGCGCGCCTGGCCGATCTCGACGAGTTGCCGCTGGCCTGGGAAGGCGGCGACAACCTGCGC
GACTTCGCCCGCCGCCTACGCAGTTTCCAGGCTCGTCCGGCGACCCCGCCGCAAGGCCTGCGCGCCGAACTG
CGGCCCTACCAGCTCGAAGGCCTGAGCTGGATGCAGACCCTGCGCGAACTCGACAGCGGCGGCGTGCTGGCC
GACGACATGGGGCTGGGCAAGACCTTGCAGTCGCTGGCCCACGTGCTCCTGGAAAAGCAGGCCGGGCGGCTC
GACACGCCGGCGCTGGTGGTGATGCCCACCAGCCTGATCCCCAACTGGCTGGACGAGGCCGAGCGCTTCGCT
CCCGATCTGCGCGTGCTGGCCCTGCACGGCGCCGGCCGGCGCCGCGACTTCGCCCGTATCGACGAGCACGAC
CTGGTGCTGACCACCTATGCCCTGCTGCCACGCGACGCCGCCGAGCTGGGCAAGCGGCGGTTCCACCTGCTG
ATCCTCGACGAGGCGCAGAACATCAAGAACGCCACCACCAAGGCCGCCGTCGCCGCCCGCGAGCTGGCGGCA
CGGCATCGCCTGTGCCTGACCGGCACGCCGCTGGAGAACCACCTCGGCGAACTCTGGTCGCTGTTCCATTTC
CTGATGCCCGGCTGGCTCGGCGACGCCCGCCAGTTCGCCCAGGACTACCGCACGCCGATCGAGAAGCACGGC
GACGAGGCACGCCTCAGCCACCTGGCCGCGCGCCTGCGGCCGTTCCTGCTGCGACGGACCAAGGAACAGGTG
GCCTCGGAACTGCCGCCGAAGAGCGAGTTCACCCAGTTCGTCGAACTCAGCGAGGCGCAACGCGAACTCTAC
GAGACCGTGCGCCTGGCGCTGGACCGCAAGGTCCGCGAGGAGATCGCCCGGCGCGGCCTGGCGCGCAGCCGC
ATCGTGATCCTCGAGGCGCTGCTCAAGCTGCGCCAGGTCTGCTGCGACACGCGCCTGCTGCAACGCCAGGAA
GACGGCGCGCGCAGCGGCCGGGCGCTCAGCTCGGGCAAGCTGGCCTACCTGCTCGACATGCTCGACGAACTG
ATCGCCGAGGGTCGCCGGGTCCTGCTGTTCTCGCAGTTCACCTCGATGCTCGCGCTGATCGAGGACGCCCTG
CGCCAGCGCGGCGTCGACTACGTCCTGCTGACCGGCGAGACCCGCGACCGCCGCGCCCCGGTACAGCGCTTC
CAGAGCGGCAAGGTGCCGGTGTTCCTGATCAGCTTGAAGGCAGGCGGGGTCGGCCTCAACCTGACCGCGGCG
GACACCGTGATCCACTACGATCCCTGGTGGAACCCGGCGGTGGAGAACCAGGCCAGCGACCGCGCCTACCGC
ATCGGCCAGGACAAGCCGGTGTTCGTCTACCGGCTGATCGCCCGCGGCACGGTGGAAGAGAAGATCCAGCAC
CTGCAGCAGGAAAAGGCCGCCCTCGCCGACGGCCTGTTCAGCGAAGGCAACGGCGACGGCTGGAAGCTTGAC
GAGGCCGATATCGACGCGCTGTTCGCGCCCTTGCCCAAGGCGCTCTGA
Translation:
MFELPGDNAWLHFMQDDLPRLRQQGWFIDIRADFAYDLTPIDAWYAEVEEADDRQWFELELGIQVAGQRVSL
LPALTELIRRSPALLDPRALARHADEEQLVLRLELNPPLRVALPFGRLKPVLATLSDFYLGDPEPQRKLRLG
APDAARLADLDELPLAWEGGDNLRDFARRLRSFQARPATPPQGLRAELRPYQLEGLSWMQTLRELDSGGVLA
DDMGLGKTLQSLAHVLLEKQAGRLDTPALVVMPTSLIPNWLDEAERFAPDLRVLALHGAGRRRDFARIDEHD
LVLTTYALLPRDAAELGKRRFHLLILDEAQNIKNATTKAAVAARELAARHRLCLTGTPLENHLGELWSLFHF
LMPGWLGDARQFAQDYRTPIEKHGDEARLSHLAARLRPFLLRRTKEQVASELPPKSEFTQFVELSEAQRELY
ETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRALSSGKLAYLLDMLDEL
IAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPVQRFQSGKVPVFLISLKAGGVGLNLTAA
DTVIHYDPWWNPAVENQASDRAYRIGQDKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDGWKLD
EADIDALFAPLPKAL*
AnnotationID:366GeneID:357
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 16:04:05
Gene Name:
Confidence Code:3
GeneProduct:probable helicase
Cell Localization:()
Synonyms:PA0799
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG0385, Chromatin remodeling complex WSTF-ISWI, small subunit. Score: 342, 2e-94
KOG0387, Transcription-coupled repair protein CSB/RAD26.  Score: 338, 3e-93
KOG0392, SNF2 family DNA-dependent ATPase domain-cont... Score: 333, 1e-91






   
Genomic Context:






   
Comment:


















    ReferenceID:717




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17859




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:357
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
601
                           PA0799_tr
                           translation of PA0799
                           663
                           99.84
                           99.84
                           0
                           3395.0
     

     
     
28198
                           gb|AAG04188.1|AE004515_4
                           (AE004515) probable helicase [Pseudomonas aeruginosa PAO1]
                           663
                           99.84
                           99.84
                           0
                           3395.0
     

     
     
28200
                           gb|AAN67759.1|AE016407_3
                           (AE016782) helicase, SNF2/RAD54 family [Pseudomonas putida KT2440]
                           671
                           63.93
                           78.39
                           13
                           2231.0
     

     
     
28199
                           gb|AAO55617.1|
                           (AE016863) helicase/SNF2 family domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           921
                           47.66
                           58.19
                           261
                           2310.0
     

     
     
28203
                           gb|AAF10831.1|AE001973_4
                           (AE001973) DNA helicase, SNF2/RAD54 family [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           678
                           43.51
                           55.45
                           93
                           1275.0
     

     






      

          
GC ORFID: 43359How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0799Glimmer Score: 

          
Start: 175128Stop: 173137

          
Length: 1992


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0799 translation of PA0799Homolog Bit Score 1312.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene525 (ORF: BLASTX 952.0), t_PA0799 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGAACTGCCCGGCGACAACGCCTGGCTGCACTTCATGCAGGACGATCTGCCGCGCCTGCGCCAGCAG 
GGCTGGTTCATCGACATCCGCGCTGACTTCGCCTACGACCTGACGCCCATCGACGCCTGGTACGCCGAGGTC 
GAGGAAGCCGACGACCGCCAGTGGTTCGAGCTGGAACTGGGCATCCAGGTCGCCGGACAGCGGGTCAGCCTG 
CTGCCGGCGCTGACCGAGCTGATCCGCCGCAGTCCGGCCCTGCTCGATCCGCGCGCCCTCGCCCGGCACGCC 
GACGAAGAGCAACTGGTGCTGCGCCTGGAACTCAACCCGCCGCTGCGCGTGGCGCTGCCCTTCGGCCGTCTG 
AAGCCGGTGCTGGCGACGCTTTCCGACTTCTACCTGGGCGACCCCGAACCGCAGCGCAAGCTGCGCCTGGGC 
GCACCGGACGCGGCGCGCCTGGCCGATCTCGACGAGTTGCCGCTGGCCTGGGAAGGCGGCGACAACCTGCGC 
GACTTCGCCCGCCGCCTACGCAGTTTCCAGGCTCGTCCGGCGACCCCGCCGCAAGGCCTGCGCGCCGAACTG 
CGGCCCTACCAGCTCGAAGGCCTGAGCTGGATGCAGACCCTGCGCGAACTCGACAGCGGCGGCGTGCTGGCC 
GACGACATGGGGCTGGGCAAGACCTTGCAGTCGCTGGCCCACGTGCTCCTGGAAAAGCAGGCCGGGCGGCTC 
GACACGCCGGCGCTGGTGGTGATGCCCACCAGCCTGATCCCCAACTGGCTGGACGAGGCCGAGCGCTTCGCT 
CCCGATCTGCGCGTGCTGGCCCTGCACGGCGCCGGCCGGCGCCGCGACTTCGCCCGTATCGACGAGCACGAC 
CTGGTGCTGACCACCTATGCCCTGCTGCCACGCGACGCCGCCGAGCTGGGCAAGCGGCGGTTCCACCTGCTG 
ATCCTCGACGAGGCGCAGAACATCAAGAACGCCACCACCAAGGCCGCCGTCGCCGCCCGCGAGCTGGCGGCA 
CGGCATCGCCTGTGCCTGACCGGCACGCCGCTGGAGAACCACCTCGGCGAACTCTGGTCGCTGTTCCATTTC 
CTGATGCCCGGCTGGCTCGGCGACGCCCGCCAGTTCGCCCAGGACTACCGCACGCCGATCGAGAAGCACGGC 
GACGAGGCACGCCTCAGCCACCTGGCCGCGCGCCTGCGGCCGTTCCTGCTGCGACGGACCAAGGAACAGGTG 
GCCTCGGAACTGCCGCCGAAGAGCGAGTTCACCCAGTTCGTCGAACTCAGCGAGGCGCAACGCGAACTCTAC 
GAGACCGTGCGCCTGGCGCTGGACCGCAAGGTCCGCGAGGAGATCGCCCGGCGCGGCCTGGCGCGCAGCCGC 
ATCGTGATCCTCGAGGCGCTGCTCAAGCTGCGCCAGGTCTGCTGCGACACGCGCCTGCTGCAACGCCAGGAA 
GACGGCGCGCGCAGCGGCCGGGCGCTCAGCTCGGGCAAGCTGGCCTACCTGCTCGACATGCTCGACGAACTG 
ATCGCCGAGGGTCGCCGGGTCCTGCTGTTCTCGCAGTTCACCTCGATGCTCGCGCTGATCGAGGACGCCCTG 
CGCCAGCGCGGCGTCGACTACGTCCTGCTGACCGGCGAGACCCGCGACCGCCGCGCCCCGGTACAGCGCTTC 
CAGAGCGGCAAGGTGCCGGTGTTCCTGATCAGCTTGAAGGCAGGCGGGGTCGGCCTCAACCTGACCGCGGCG 
GACACCGTGATCCACTACGATCCCTGGTGGAACCCGGCGGTGGAGAACCAGGCCAGCGACCGCGCCTACCGC 
ATCGGCCAGGACAAGCCGGTGTTCGTCTACCGGCTGATCGCCCGCGGCACGGTGGAAGAGAAGATCCAGCAC 
CTGCAGCAGGAAAAGGCCGCCCTCGCCGACGGCCTGTTCAGCGAAGGCAACGGCGACGGCTGGAAGCTTGAC 
GAGGCCGATATCGACGCGCTGTTCGCGCCCTTGCCCAAGGCGCTCTGA