ViewGene

Locus Name:
GeneID:
Location:

GeneID:3569
TrivialName: PA14_39880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39880
PAO1 Ortholog Locus:PA1905
Sequence Length:648
Protein Length:215
Start: 3556106
Stop: 3555459
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO42617.1| (AE004616) probable pyridoxamine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1]
Identities = 214/215 (99%), Positives = 214/215 (99%)
Sequence:
ATGATGGGCGTCAACGCGAACATTTCCGAGTCCCTCACCGGGACCATCGAAGCCCCTTTCCCGGAGTTCGAG
GCGCCGCCGGCGAACCCCATGGAGGTGCTGCGCAACTGGCTGGAACGCGCCCGCCGCTATGGCGTGCGCGAG
CCGCGGGCACTGGCCCTGGCCACGGTCGACGGGCAGGGCCGGCCGTCGACGCGGATCGTGGTGATCGCCGAA
CTCGGCGAGCGCGGGGTGGTGTTCGCCACCCACGCCGATAGCCAGAAGGGCCGCGAACTGGCGCAGAACCCC
TGGGCCTCGGGGGTGCTGTACTGGCGCGAGAGCAGCCAGCAGATCATCCTCAACGGCCGCGCCGAACGCCTG
CCCGACGAGCGTGCCGACGCCCAGTGGCTGAGCCGCCCGTACCAGACCCACCCGATGTCGATCGCCTCGCGG
CAGAGCGAAACCCTCGCCGACATCCACGCCCTGCGCGCCGCAGCCCGGCGCCTGGCGGAAACCGACGGCCCG
CTGCCGCGCCCGCCGGGCTACTGCCTGTTCGAACTGTGCCTGGAGTCGGTGGAGTTCTGGGGCAACGGCACC
GAGCGGCTGCACGAGCGCCTGCGCTACGACCGCGACGAAGGAGGCTGGAAGCACCGCTACCTGCAACCGTGA
Translation:
MMGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAE
LGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASR
QSETLADIHALRAAARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP*
AnnotationID:3577GeneID:3569
AnnotatorUID: danlee
Modification Date/Time: 2003-11-13 14:02:30
Gene Name:phzG2
Confidence Code:1
GeneProduct:probable pyridoxamine 5'-phosphate oxidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Phenazine biosynthesis.
Homology:
corresponds to PA1905 of PAO1 (based on sequence and genomic context).
Structural Features:
Genomic Context:
Operon phzA2B2C2D2E2F2G2
Comment:
ReferenceID:7141
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24283
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3569

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
159187 gb|AAO42617.1| (AE004616) probable pyridoxamine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1] 215 99.53 99.53 0 1135.0
5707 PA1905_tr translation of PA1905 215 99.06 99.53 0 1131.0
5708 PA4216_tr translation of PA4216 215 99.06 99.06 1 1130.0
159188 gb|AAG07604.1|AE004838_8 (AE004838) probable pyridoxamine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1] 215 99.06 99.06 1 1130.0
159189 gb|AAC64493.2| (AF005404) PhzG [Pseudomonas aeruginosa] 215 99.06 99.06 1 1130.0
GC ORFID: 46571How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1905Glimmer Score:
Start: 1397805Stop: 1398452
Length: 648
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1905 translation of PA1905Homolog Bit Score 440.0
Other Homologs: t_PA4216 (ORF: BLASTX 439.0), t_PA1905 (ORF: GLIMMER)
GC ORF Sequence
ATGATGGGCGTCAACGCGAACATTTCCGAGTCCCTCACCGGGACCATCGAAGCCCCTTTCCCGGAGTTCGAG
GCGCCGCCGGCGAACCCCATGGAGGTGCTGCGCAACTGGCTGGAACGCGCCCGCCGCTATGGCGTGCGCGAG
CCGCGGGCACTGGCCCTGGCCACGGTCGACGGGCAGGGCCGGCCGTCGACGCGGATCGTGGTGATCGCCGAA
CTCGGCGAGCGCGGGGTGGTGTTCGCCACCCACGCCGATAGCCAGAAGGGCCGCGAACTGGCGCAGAACCCC
TGGGCCTCGGGGGTGCTGTACTGGCGCGAGAGCAGCCAGCAGATCATCCTCAACGGCCGCGCCGAACGCCTG
CCCGACGAGCGTGCCGACGCCCAGTGGCTGAGCCGCCCGTACCAGACCCACCCGATGTCGATCGCCTCGCGG
CAGAGCGAAACCCTCGCCGACATCCACGCCCTGCGCGCCGCAGCCCGGCGCCTGGCGGAAACCGACGGCCCG
CTGCCGCGCCCGCCGGGCTACTGCCTGTTCGAACTGTGCCTGGAGTCGGTGGAGTTCTGGGGCAACGGCACC
GAGCGGCTGCACGAGCGCCTGCGCTACGACCGCGACGAAGGAGGCTGGAAGCACCGCTACCTGCAACCGTGA