ViewGene
Locus Name:
GeneID:
Location:

GeneID:3568
TrivialName: PA14_00570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00570
PAO1 Ortholog Locus:PA0045
Sequence Length:687
Protein Length:228
Start: 59018
Stop: 59704
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03435.1|AE004444_4 (AE004444) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 227/228 (99%), Positives = 227/228 (99%)
Sequence:
ATGAGTCACAGCGCCAACAAAGCACTACTGCCGCTCCTCGCCGTCGCCACCCTGGCCGGCCTGGCGGGCTGC
GCCACCGAGACCTCCACCGCATTGCCGGTACAGCAGGTTGAGAGCGTCAACCGACCCTACAGCGGCGTGCGT
TCGCCGATTGCGGTAGGCAAGTTCGACAACCGCTCCAGCTACATGCGCGGGATCTTTTCCGATGGCGTCGAC
CGCCTCGGCGGCCAGGCCAAGACCATTCTCATCACCCACCTGCAGCAGACCAATCGCTTCAACGTGCTGGAC
CGCGACAACATGAGCGAGATCCAGCAGGAAGCGGCGATCAAGGGCCAGGCCCAGCGCCTGAAGGGTGCCGAC
TACGTGGTGACCGGCGACGTCACCGAGTTCGGCCGCAAGGAAGTCGGCGACCGCCAGCTGTTCGGCATCCTC
GGCCGCGGCAAGTCGCAGATCGCCTACGCCAAGGTGGCGCTGAACATCGTCAACATCTCTACCTCGGAGGTC
GTCTATTCGACCCAGGGCGCTGGCGAGTACGCCCTGTCCAACCGCGAGGTGATTGGCTTCGGCGGCACCGCC
AGCTACGACTCGACCCTCAACGGCAAGGTCCTCGACCTGGCCATGCGCGAGGCGGTGAACAAGTTGGTCAAC
GCGGTCGATAGCGGCGCCTGGAAGCCACAGAACCAATAA
Translation:
MSHSANKALLPLLAVATLAGLAGCATETSTALPVQQVESVNRPYSGVRSPIAVGKFDNRSSYMRGIFSDGVD
RLGGQAKTILITHLQQTNRFNVLDRDNMSEIQQEAAIKGQAQRLKGADYVVTGDVTEFGRKEVGDRQLFGIL
GRGKSQIAYAKVALNIVNISTSEVVYSTQGAGEYALSNREVIGFGGTASYDSTLNGKVLDLAMREAVNKLVN
AVDSGAWKPQNQ*
AnnotationID:3576GeneID:3568
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 15:03:40
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA0045
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1462,pfam03783
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17824.1| (AL646080) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
          Length = 227

 Score =  360 bits (923), Expect = 5e-99
 Identities = 178/215 (82%), Positives = 197/215 (91%)

>gb|AAO54775.1| (AE016860) CsgG family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 227

 Score =  356 bits (914), Expect = 5e-98
 Identities = 180/213 (84%), Positives = 194/213 (91%)

>emb|CAB84585.1| (AL162755) putative periplasmic protein [Neisseria meningitidis
           Z2491]
          Length = 223

 Score =  322 bits (824), Expect = 1e-87
 Identities = 156/214 (72%), Positives = 185/214 (86%)








 
Structural Features:
COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers 
[Cell envelope biogenesis, outer membrane]
CD-Length = 252 residues,  94.0% aligned
Score =  235 bits (600), Expect = 4e-63
Identities = 129/237 (54%), Positives = 154/237 (64%), Gaps = 15/237 (6%)

pfam03783, CsgG, Curli production assembly/transport component CsgG.
CD-Length = 234 residues, 100.0% aligned
Score =  206 bits (525), Expect = 2e-54
Identities = 103/234 (44%), Positives = 130/234 (55%), Gaps = 17/234 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33409




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3568_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3568
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5706
                           PA0045_tr
                           translation of PA0045
                           228
                           99.56
                           99.56
                           0
                           1133.0
     

     
     
159178
                           gb|AAG03435.1|AE004444_4
                           (AE004444) hypothetical protein PA0045 [Pseudomonas aeruginosa PAO1]
                           228
                           99.56
                           99.56
                           0
                           1133.0
     

     
     
159180
                           gb|AAO54775.1|
                           (AE016860) CsgG family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           228
                           79.38
                           86.40
                           1
                           907.0
     

     
     
159179
                           emb|CAD17824.1|
                           (AL646080) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
                           228
                           78.50
                           88.15
                           1
                           920.0
     

     
     
159185
                           emb|CAC92216.1|
                           (AJ414154) putative lipoprotein [Yersinia pestis CO92]
                           228
                           70.17
                           81.57
                           5
                           815.0
     

     






      

          
GC ORFID: 46570How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0045Glimmer Score: 

          
Start: 5860355Stop: 5861041

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0045 translation of PA0045Homolog Bit Score 441.0

          
Other Homologs:  t_PA0045 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCACAGCGCCAACAAAGCACTACTGCCGCTCCTCGCCGTCGCCACCCTGGCCGGCCTGGCGGGCTGC 
GCCACCGAGACCTCCACCGCATTGCCGGTACAGCAGGTTGAGAGCGTCAACCGACCCTACAGCGGCGTGCGT 
TCGCCGATTGCGGTAGGCAAGTTCGACAACCGCTCCAGCTACATGCGCGGGATCTTTTCCGATGGCGTCGAC 
CGCCTCGGCGGCCAGGCCAAGACCATTCTCATCACCCACCTGCAGCAGACCAATCGCTTCAACGTGCTGGAC 
CGCGACAACATGAGCGAGATCCAGCAGGAAGCGGCGATCAAGGGCCAGGCCCAGCGCCTGAAGGGTGCCGAC 
TACGTGGTGACCGGCGACGTCACCGAGTTCGGCCGCAAGGAAGTCGGCGACCGCCAGCTGTTCGGCATCCTC 
GGCCGCGGCAAGTCGCAGATCGCCTACGCCAAGGTGGCGCTGAACATCGTCAACATCTCTACCTCGGAGGTC 
GTCTATTCGACCCAGGGCGCTGGCGAGTACGCCCTGTCCAACCGCGAGGTGATTGGCTTCGGCGGCACCGCC 
AGCTACGACTCGACCCTCAACGGCAAGGTCCTCGACCTGGCCATGCGCGAGGCGGTGAACAAGTTGGTCAAC 
GCGGTCGATAGCGGCGCCTGGAAGCCACAGAACCAATAA