ViewGene
Locus Name:
GeneID:
Location:

GeneID:3567
TrivialName: PA14_60790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60790
PAO1 Ortholog Locus:PA4594
Sequence Length:687
Protein Length:228
Start: 5418872
Stop: 5418186
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07982.1|AE004873_4 (AE004873) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 227/228 (99%), Positives = 227/228 (99%)
Sequence:
TTGATCTCCCTGCAGGGGATCGGCAAGGGCTACCTCCTGGGGGGGCAGCCGCTGCAGATACTGAAAGACGTC
TGCCTGGACATCTTTCCCGGAGAAAGCTGCGCGATCGTCGGCGCGTCGGGCTCGGGCAAGAGCACCCTGCTG
AATATTCTCGGCCTGCTCGACCGCCCGGACAGCGGCGCCTACCGCTTCGCCGAGCACGACATCTTCAGCGTC
GACGGGGACCGACTGGCGGCGATCCGCAACCGCCTGATCGGCTTCGTCTTCCAGAGCTTCAACCTGTTGCCG
CGGCTGAACGCGCTGGACAACGTCGCGCTGCCCCTGAGCTATCGAGGGATGCCGCGCCGCGAGGCACTGGAG
CGGGCCGAGGCGATGCTCGCCCGGGTCGGCCTGGCCGAGCGCGCCGGCCATCGTCCGGCGGACCTCTCCGGC
GGCCAGCGGCAGCGCGTCGCCATCGCTCGCGCGCTGGTCGGCGAGCCGGCGCTGATCCTCGCCGACGAACCA
ACCGGCAACCTCGACGCGAGCACCGCGAAAGAAGTGCTGGAGCTGCTCCTCACCCTCAACCGCGAGCGCCAG
GTGACCCTGGTGGTGGTCACCCATGATCCCAGCCTGGCCGCCCGTCTCGGGCGCCAACTGACAGTGCGGCAT
GGCGAGGTGCACGAGGACCTGGCGGAGGCCTGCCGGTGA
Translation:
MISLQGIGKGYLLGGQPLQILKDVCLDIFPGESCAIVGASGSGKSTLLNILGLLDRPDSGAYRFAEHDIFSV
DGDRLAAIRNRLIGFVFQSFNLLPRLNALDNVALPLSYRGMPRREALERAEAMLARVGLAERAGHRPADLSG
GQRQRVAIARALVGEPALILADEPTGNLDASTAKEVLELLLTLNRERQVTLVVVTHDPSLAARLGRQLTVRH
GEVHEDLAEACR*
AnnotationID:3575GeneID:3567
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 06:06:44
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:PA4594
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1136,COG4181,COG1126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85810.1| (BX321862) ATPase component ABC-type (unclassified) transport
           system [Nitrosomonas europaea ATCC 19718]
          Length = 250

 Score =  223 bits (568), Expect = 7e-58
 Identities = 118/227 (51%), Positives = 157/227 (69%), Gaps = 5/227 (2%)

>gb|AAN58578.1|AE014927_7 (AE014927) putative ABC transporter, ATP-binding protein
           [Streptococcus mutans UA159]
          Length = 235

 Score =  217 bits (552), Expect = 5e-56
 Identities = 111/222 (50%), Positives = 155/222 (69%), Gaps = 1/222 (0%)








 
Structural Features:
COG1136, SalX, ABC-type antimicrobial peptide transport system, 
ATPase component [Defense mechanisms]
CD-Length = 226 residues,  98.7% aligned
Score =  280 bits (717), Expect = 3e-76
Identities = 117/223 (52%), Positives = 151/223 (67%), Gaps = 1/223 (0%)

COG4181, Predicted ABC-type transport system involved in 
lysophospholipase L1 biosynthesis, ATPase component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 228 residues,  97.4% aligned
Score =  234 bits (597), Expect = 2e-62
Identities = 116/222 (52%), Positives = 146/222 (65%)

COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  90.0% aligned
Score =  206 bits (525), Expect = 5e-54
Identities = 89/224 (39%), Positives = 133/224 (59%), Gaps = 10/224 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14881




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24279




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31627




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3567_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3567
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5688
                           PA4594_tr
                           translation of PA4594
                           228
                           99.56
                           99.56
                           0
                           1135.0
     

     
     
158505
                           gb|AAG07982.1|AE004873_4
                           (AE004873) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           228
                           99.12
                           99.56
                           0
                           1133.0
     

     
     
158506
                           emb|CAE15022.1|
                           (BX571867) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           233
                           54.93
                           66.95
                           35
                           601.0
     

     
     
158531
                           gb|AAQ66682.1|
                           (AE017177) ABC transporter, ATP-binding protein [Porphyromonas gingivalis W83]
                           228
                           52.19
                           67.54
                           9
                           537.0
     

     
     
158507
                           dbj|BAC89941.1|
                           (AP006575) ATP-binding protein of ABC transporter [Gloeobacter violaceus PCC 7421]
                           230
                           51.73
                           68.69
                           3
                           571.0
     

     






      

          
GC ORFID: 46569How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4594Glimmer Score: 

          
Start: 4682552Stop: 4681866

          
Length: 687


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4594 translation of PA4594Homolog Bit Score 441.0

          
Other Homologs:  t_PA2987 (ORF: BLASTX 204.0), t_PA2857 (ORF: BLASTX 201.0), psyr_15may02_Scaffold1_revised_gene899 (ORF: BLASTX 194.0), psyr_15may02_Scaffold5_revised_gene5985 (ORF: BLASTX 156.0), t_PA0374 (ORF: BLASTX 147.0), t_PA5152 (ORF: BLASTX 141.0), psyr_15may02_Scaffold6_revised_gene6950 (ORF: BLASTX 140.0), t_PA0892 (ORF: BLASTX 138.0), t_PA0073 (ORF: BLASTX 135.0), psyr_15may02_Scaffold2_revised_gene3825 (ORF: BLASTX 135.0), psyr_15may02_Scaffold3_revised_gene4390 (ORF: BLASTX 133.0), psyr_15may02_Scaffold2_revised_gene3873 (ORF: BLASTX 133.0), psyr_15may02_Scaffold1_revised_gene1332 (ORF: BLASTX 128.0), psyr_15may02_Scaffold13_revised_gene2121 (ORF: BLASTX 119.0), t_PA4594 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGATCTCCCTGCAGGGGATCGGCAAGGGCTACCTCCTGGGGGGGCAGCCGCTGCAGATACTGAAAGACGTC 
TGCCTGGACATCTTTCCCGGAGAAAGCTGCGCGATCGTCGGCGCGTCGGGCTCGGGCAAGAGCACCCTGCTG 
AATATTCTCGGCCTGCTCGACCGCCCGGACAGCGGCGCCTACCGCTTCGCCGAGCACGACATCTTCAGCGTC 
GACGGGGACCGACTGGCGGCGATCCGCAACCGCCTGATCGGCTTCGTCTTCCAGAGCTTCAACCTGTTGCCG 
CGGCTGAACGCGCTGGACAACGTCGCGCTGCCCCTGAGCTATCGAGGGATGCCGCGCCGCGAGGCACTGGAG 
CGGGCCGAGGCGATGCTCGCCCGGGTCGGCCTGGCCGAGCGCGCCGGCCATCGTCCGGCGGACCTCTCCGGC 
GGCCAGCGGCAGCGCGTCGCCATCGCTCGCGCGCTGGTCGGCGAGCCGGCGCTGATCCTCGCCGACGAACCA 
ACCGGCAACCTCGACGCGAGCACCGCGAAAGAAGTGCTGGAGCTGCTCCTCACCCTCAACCGCGAGCGCCAG 
GTGACCCTGGTGGTGGTCACCCATGATCCCAGCCTGGCCGCCCGTCTCGGGCGCCAACTGACAGTGCGGCAT 
GGCGAGGTGCACGAGGACCTGGCGGAGGCCTGCCGGTGA